DCLEAR

CRANDCLEARMaRDI QIDQ75358

Distance Based Cell Lineage Reconstruction

Il-Youp Kwak, Wuming Gong

Last update: 14 September 2023

Copyright license: GNU General Public License, version 3.0

Software version identifier: 1.0.12, 1.0.0, 1.0.8, 1.0.11, 1.0.13

Description

R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020. References: Gong et al. (2021) <doi:10.1016/j.cels.2021.05.008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>.

Cites work

• Benchmarked approaches for reconstruction of in vitro cell lineages and in silico models of C. elegans and M. musculus developmental trees
• Single cell lineage reconstruction using distance-based algorithms and the R package, DCLEAR

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