wrGraph

CRANwrGraphMaRDI QIDQ79615FDOQ79615

Graphics in the Context of Analyzing High-Throughput Data

Wolfgang Raffelsberger

Last update: 22 January 2024

Copyright license: GNU General Public License, version 3.0

Software version identifier: 1.3.2, 1.3.3, 1.0.1, 1.0.2, 1.0.4, 1.0.5, 1.1.0, 1.1.1, 1.2.0, 1.2.1, 1.2.2, 1.2.3, 1.2.4, 1.2.5, 1.3.0, 1.3.1, 1.3.4, 1.3.5, 1.3.6, 1.3.7

Description

Additional options for making graphics in the context of analyzing high-throughput data are available here. This includes automatic segmenting of the current device (eg window) to accommodate multiple new plots, automatic checking for optimal location of legends in plots, small histograms to insert as legends, histograms re-transforming axis labels to linear when plotting log2-transformed data, a violin-plot <doi:10.1080/00031305.1998.10480559> function for a wide variety of input-formats, principal components analysis (PCA) <doi:10.1080/14786440109462720> with bag-plots <doi:10.1080/00031305.1999.10474494> to highlight and compare the center areas for groups of samples, generic MA-plots (differential- versus average-value plots) <doi:10.1093/nar/30.4.e15>, staggered count plots and generation of mouse-over interactive html pages.

Cites work

• Violin Plots: A Box Plot-Density Trace Synergism
• LIII. On lines and planes of closest fit to systems of points in space
• The Bagplot: A Bivariate Boxplot
• Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

This page was built for software: wrGraph