nodeSub
Simulate DNA Alignments Using Node Substitutions
Last update: 14 November 2023
Copyright license: GNU General Public License, version 3.0
Software version identifier: 1.2.5, 1.2.2, 1.2.3, 1.2.4, 1.2.7, 1.2, 1.2.8
Simulate DNA sequences for the node substitution model. In the node substitution model, substitutions accumulate additionally during a speciation event, providing a potential mechanistic explanation for substitution rate variation. This package provides tools to simulate such a process, simulate a reference process with only substitutions along the branches, and provides tools to infer phylogenies from alignments. More information can be found in Janzen (2021) <doi:10.1093/sysbio/syab085>.
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