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Bottom-Up Proteomics and LiP-MS Quality Control and Data Analysis Tools

Last update: 17 February 2024

Copyright license: MIT license, File License

Software version identifier: 0.6.0, 0.1.0, 0.1.1, 0.2.0, 0.2.1, 0.2.2, 0.3.0, 0.3.1, 0.4.0, 0.5.0, 0.7.0

Description

Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014) <doi:10.1038/nbt.2999>) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.

Cites work

Global analysis of protein structural changes in complex proteomes

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