sharp

CRANsharpMaRDI QIDQ80983

Stability-enHanced Approaches using Resampling Procedures

Barbara Bodinier

Last update: 3 February 2024

Copyright license: GNU General Public License

Software version identifier: 1.3.0, 1.4.0, 1.1.0, 1.2.0, 1.2.1, 1.4.1, 1.4.2, 1.4.3, 1.4.4, 1.4.5, 1.4.6

Description

In stability selection (N Meinshausen, P Bühlmann (2010) <doi:10.1111/j.1467-9868.2010.00740.x>) and consensus clustering (S Monti et al (2003) <doi:10.1023/A:1023949509487>), resampling techniques are used to enhance the reliability of the results. In this package, hyper-parameters are calibrated by maximising model stability, which is measured under the null hypothesis that all selection (or co-membership) probabilities are identical (B Bodinier et al (2023a) <doi:10.1093/jrsssc/qlad058> and B Bodinier et al (2023b) <doi:10.1093/bioinformatics/btad635>). Functions are readily implemented for the use of LASSO regression, sparse PCA, sparse (group) PLS or graphical LASSO in stability selection, and hierarchical clustering, partitioning around medoids, K means or Gaussian mixture models in consensus clustering.

Cites work

• Unnamed Publication
• Stability Selection
• Automated calibration for stability selection in penalised regression and graphical models
• Automated calibration of consensus weighted distance-based clustering approaches using sharp

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