mappoly
Genetic Linkage Maps in Autopolyploids
Jeekin Lau, Gabriel Gesteira, Cristiane Taniguti, Marcelo Mollinari
Last update: 17 February 2024
Copyright license: GNU General Public License, version 3.0
Software version identifier: 0.3.3, 0.2.0, 0.2.1, 0.2.3, 0.3.0, 0.3.1, 0.3.2, 0.4.0
Construction of genetic maps in autopolyploid full-sib populations. Uses pairwise recombination fraction estimation as the first source of information to sequentially position allelic variants in specific homologous chromosomes. For situations where pairwise analysis has limited power, the algorithm relies on the multilocus likelihood obtained through a hidden Markov model (HMM). For more detail, please see Mollinari and Garcia (2019) <doi:10.1534/g3.119.400378> and Mollinari et al. (2020) <doi:10.1534/g3.119.400620>.
