netgsa

CRANnetgsaMaRDI QIDQ92135

Network-Based Gene Set Analysis

Ali Shojaie, Kun Yue, Michael Hellstern, Jing Ma

Last update: 14 November 2023

Copyright license: GNU General Public License

Software version identifier: 4.0.4, 1.0, 2.0, 3.0, 3.1.0, 4.0.0, 4.0.1, 4.0.2, 4.0.3, 4.0.5

Description

Carry out network-based gene set analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data. Implements methods described in Shojaie A, Michailidis G (2010) <doi:10.1093/biomet/asq038>, Shojaie A, Michailidis G (2009) <doi:10.1089/cmb.2008.0081>, and Ma J, Shojaie A, Michailidis G (2016) <doi:10.1093/bioinformatics/btw410>.

Cites work

• Penalized likelihood methods for estimation of sparse high-dimensional directed acyclic graphs
• Analysis of Gene Sets Based on the Underlying Regulatory Network
• Network-based pathway enrichment analysis with incomplete network information

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