spBayesSurv

MaRDI QIDQ28241swMATHCRANFDO

Authors Haiming Zhou, Timothy Hanson

Last update 23 February 2024

Copyright license GNU General Public License, version 3.0, GNU General Public License, version 2.0

Software version identifier 1.1.6, 1.1.7, 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.0.4, 1.0.5, 1.0.6, 1.1.0, 1.1.1, 1.1.2, 1.1.3, 1.1.4, 1.1.5, 1.1.6, 1.1.8

Official website https://cran.r-project.org/web/packages/spBayesSurv/index.html

Source code repository https://github.com/cran/spBayesSurv

Description

Provides several Bayesian survival models for spatial/non-spatial survival data: proportional hazards (PH), accelerated failure time (AFT), proportional odds (PO), and accelerated hazards (AH), a super model that includes PH, AFT, PO and AH as special cases, Bayesian nonparametric nonproportional hazards (LDDPM), generalized accelerated failure time (GAFT), and spatially smoothed Polya tree density estimation. The spatial dependence is modeled via frailties under PH, AFT, PO, AH and GAFT, and via copulas under LDDPM and PH. Model choice is carried out via the logarithm of the pseudo marginal likelihood (LPML), the deviance information criterion (DIC), and the Watanabe-Akaike information criterion (WAIC). See Zhou, Hanson and Zhang (2020) <doi:10.18637/jss.v092.i09>.

Cites work

• spBayesSurv: Fitting Bayesian Spatial Survival Models Using R

Described by source

• Marginal Bayesian nonparametric model for time to disease arrival of threatened amphibian populations
• A Unified Framework for Fitting Bayesian Semiparametric Models to Arbitrarily Censored Survival Data, Including Spatially Referenced Data

Cited in

(32)

• Generalized accelerated failure time spatial frailty model for arbitrarily censored data
• bayesSurv
• survBayes
• icenReg
• dynsurv
• rstpm2
• compound.Cox
• SemiCompRisks
• frailtyHL
• DPWeibull
• LSS
• frailtyGAFT
• spatsurv
• rbugs
• psbcGroup
• Glmnet
• RobustAFT
• ICBayes
• pseudo
• pseudosurv
• blmeco
• icensBKL
• flexsurvcure
• spatialprobit
• ProbitSpatial
• eventglm
• bayesCPM
• Bayes factors for choosing among six common survival models
• ICBayes: a package of Bayesian semiparametric regression for intervel-censored data
• Bayesian thinking in biostatistics
• AGS
• Spatial survival modelling of business re-opening after Katrina: Survival modelling compared to spatial probit modelling of re-opening within 3, 6 or 12 months

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