spatstat
Comprehensive open-source toolbox for analysing Spatial Point Patterns. Focused mainly on two-dimensional point patterns, including multitype/marked points, in any spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, point patterns on a linear network, and patterns of other geometrical objects. Supports spatial covariate data such as pixel images. Contains over 3000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks. Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte Carlo) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also supported.Parametric models can be fitted to point pattern data using the functions ppm(), kppm(), slrm(), dppm() similar to glm(). Types of models include Poisson, Gibbs and Cox point processes, Neyman-Scott cluster processes, and determinantal point processes. Models may involve dependence on covariates, inter-point interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods. A model can be fitted to a list of point patterns (replicated point pattern data) using the function mppm(). The model can include random effects and fixed effects depending on the experimental design, in addition to all the features listed above.Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise(), AIC()) and variable selection (sdr). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.
- Applied Spatial Data Analysis with R
- Assessing implicit hypotheses in life table construction
- Modern statistics for spatial point processes (with discussion)
- Performance of distance sampling estimators: a simulation study for designs based on footpaths
- Modeling partially surveyed point process data: inferring spatial point intensity of geomagnetic anomalies
- Geometrically corrected second order analysis of events on a linear network, with applications to ecology and criminology
- Transforming spatial point processes into Poisson processes using random superposition
- On two-stage Monte Carlo tests of composite hypotheses
- MCMC Computations for Bayesian Mixture Models Using Repulsive Point Processes
- Variational approach for spatial point process intensity estimation
- A bound of the \(\beta\)-mixing coefficient for point processes in terms of their intensity functions
- Fast approximation of the intensity of Gibbs point processes
- Spatial logistic regression and change-of-support in Poisson point processes
- Brillinger mixing of determinantal point processes and statistical applications
- Random partition models and complementary clustering of Anglo-Saxon place-names
- Two-step estimation procedures for inhomogeneous shot-noise Cox processes
- Estimation of summary characteristics from replicated spatial point processes
- Approximate methods in Bayesian point process spatial models
- Kernel density estimation on a linear network
- Local spatial log-Gaussian Cox processes for seismic data
- Determinantal point process models and statistical inference
- Monte Carlo with determinantal point processes
- On the strong Brillinger-mixing property of \(\alpha\)-determinantal point processes and some applications.
- Reach of repulsion for determinantal point processes in high dimensions
- Identifying radon-prone building typologies by marginal modelling
- Normal approximation for associated point processes via Stein's method with applications to determinantal point processes
- Equivalence of MAXENT and Poisson point process models for species distribution modeling in ecology
- Spatial point patterns: methodology and applications with R
- Residual Analysis for Spatial Point Processes (with Discussion)
- GeoStats.jl
- A contingency table approach based on nearest neighbour relations for testing self and mixed correspondence
- Spatial point process models for location-allocation problems
- Correction note: Poisson point process models solve the ``pseudo-absence problem for presence-only data in ecology
- Exact sampling of determinantal point processes without eigendecomposition
- scientific article; zbMATH DE number 7307477 (Why is no real title available?)
- Intensity approximation for pairwise interaction Gibbs point processes using determinantal point processes
- Parameter estimation for inhomogeneous space-time shot-noise Cox point processes
- Sliced inverse regression and independence in random marked sets with covariates
- Spatio-temporal improvised explosive device monitoring: improving detection to minimise attacks
- Quantifying repulsiveness of determinantal point processes
- Determinantal sampling designs
- Territorial behaviour of buzzards versus random matrix spacing distributions
- Residual analysis for inhomogeneous Neyman-Scott processes
- On the zeros of the spectrogram of white noise
- The Accumulated Persistence Function, a New Useful Functional Summary Statistic for Topological Data Analysis, With a View to Brain Artery Trees and Spatial Point Process Applications
- Modelling Spatial Point Patterns in R
- Improving the usability of spatial point process methodology: an interdisciplinary dialogue between statistics and ecology
- The stochastic geometry of unconstrained one-bit data compression
- Consistent smooth bootstrap kernel intensity estimation for inhomogeneous spatial Poisson point processes
- Convex and non-convex regularization methods for spatial point processes intensity estimation
- Modelling and classification of species abundance: a case study in the Barro Colorado Island plot
- Principal component analysis of persistent homology rank functions with case studies of spatial point patterns, sphere packing and colloids
- Variable selection for inhomogeneous spatial point process models
- Time-frequency transforms of white noises and Gaussian analytic functions
- Self-exciting point processes: infections and implementations
- Development and evaluation of spatial point process models for epidermal nerve fibers
- Optimal transport between determinantal point processes and application to fast simulation
- Computation of coverage probabilities in a spherical germ-grain model
- Structured space-sphere point processes and \(K\)-functions
- Polynomial ensembles and recurrence coefficients
- Circulant L-ensembles in the thermodynamic limit
- Investigations of the effects of random sampling schemes on the stability of generalized sampling
- Fast computation of spatially adaptive kernel estimates
- Thinning spatial point processes into Poisson processes
- Testing goodness of fit for point processes via topological data analysis
- Mixing properties and central limit theorem for associated point processes
- A note on the simulation of the Ginibre point process
- Applied Spatial Data Analysis with R
- scientific article; zbMATH DE number 5152128 (Why is no real title available?)
- Symmetric adaptive smoothing regimens for estimation of the spatial relative risk function
- Novel concave hull-based heuristic algorithm for TSP
- Estimating inter-group interaction radius for point processes with nested spatial structures
- Cell shape analysis of random tessellations based on Minkowski tensors
- Modelling the location decisions of manufacturing firms with a spatial point process approach
- Adjusted composite likelihood ratio test for spatial Gibbs point processes
- Summary statistics for inhomogeneous marked point processes
- An extension of Monte Carlo hypothesis tests
- A new metric between distributions of point processes
- Spatiotemporal point processes: regression, model specifications and future directions
- Determinantal point processes for image processing
- Comparison of relative density of two random geometric digraph families in testing spatial clustering
- BEMLIB
- tensorA
- Surveillance
- BRATIO
- Algorithm 840
- geoR
- GRASS GIS
- KernSmooth
- spatial
- MCQueue
- JTS Topology Suite
- R-Geo
- Toolbox Fast Marching
- smacof
- INLA
- SPAGEDi
- geometry
- rgl
- sf
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