An adaptive rectangular mesh administration and refinement technique with application in cancer invasion models
type: Item
instance of: scholarly article
title: An adaptive rectangular mesh administration and refinement technique with application in cancer invasion models
zbMATH Open document ID: 1503.65212
author: Niklas Kolbe
author: Nikolaos Sfakianakis
published in: Journal of Computational and Applied Mathematics
publication date: 2022-08-04T00:00:00Z
full work available at URL: https://arxiv.org/abs/1706.06191
review text: The authors present a new developed mesh structure data administration technique used as machinery for AMR (Aaaptive mesh refinement) on (hyper-)rectangular meshes. The technique is a unified approach for h-refinement on 1-, 2- and 3D domains, which is easy to use and avoids traversing the connectivity graph of the ancestry of mesh cells. Thanks to the employed rectangular mesh structure, the identification of the siblings and the neighbouring cells is simplified. The administration technique is particularly designed for smooth meshes, where the smoothness is dynamically used in the matrix operations. It has a small memory footprint that makes it affordable for a wide range of mesh resolutions over a large class of problems. The capabilities and flexibility of the technique are shown in three applications. The first is a generic experiment in the absence of physical or biological laws where the mesh refinement is dictated by synthetic monitor functions. The second is a physical application of the technique and the AMR in the classical case of the Euler equation. The third application is a biological problem: a 2D tumour growth and invasion of the of the ECM (Extra Cellular Matrix) model.
reviewed by: Abdallah Bradji
Mathematics Subject Classification ID: 65M50
Mathematics Subject Classification ID: 65N50
Mathematics Subject Classification ID: 65M08
Mathematics Subject Classification ID: 65Y05
Mathematics Subject Classification ID: 92C50
Mathematics Subject Classification ID: 92C17
Mathematics Subject Classification ID: 35Q31
Mathematics Subject Classification ID: 35Q92
zbMATH DE Number: 7567549
zbMATH Keywords: cancer invasion
zbMATH Keywords: mesh administration
zbMATH Keywords: adaptive mesh refinement
zbMATH Keywords: finite volume method
zbMATH Keywords: h-refinement
describes a project that uses: deal.II
describes a project that uses: LAPACK
describes a project that uses: DUNE
describes a project that uses: VTK
describes a project that uses: p4est
describes a project that uses: DUNE-ALUGrid
describes a project that uses: CGAL
describes a project that uses: Vascular Modeling Toolkit
describes a project that uses: ALUGrid
describes a project that uses: OpenVolumeMesh
describes a project that uses: libMesh
describes a project that uses: Dendro
MaRDI profile type: MaRDI publication profile
OpenAlex ID: W3183100070
Wikidata QID: Q113878710
cites work: Adaptive mesh refinement for hyperbolic partial differential equations
cites work: Local adaptive mesh refinement for shock hydrodynamics
cites work: Error Estimates for Adaptive Finite Element Computations
cites work: A posteriori error estimation and adaptive mesh-refinement techniques
cites work: Numerical entropy and adaptivity for finite volume schemes
cites work: Tutorials on adaptive multiresolution for mesh refinement applied to fluid dynamics and reactive media problems
cites work: Adaptive mesh refinement for hyperbolic systems based on third-order compact WENO reconstruction
cites work: An adaptive mesh refinement solver for large-scale simulation of biological flows
cites work: Three-dimensional multispecies nonlinear tumor growth. I: Model and numerical method
cites work: A study on time discretization and adaptive mesh refinement methods for the simulation of cancer invasion: the urokinase model
cites work: An unconditionally stable second-order accurate ALE-FEM scheme for two-dimensional convection-diffusion problems
cites work: Geometry and topology for mesh generation
cites work: A simultaneous blow-up problem arising in tumor modeling
cites work: Critical mass for infinite-time blow-up in a haptotaxis system with nonlinear zero-order interaction
cites work: A mathematical insight in the epithelial-mesenchymal-like transition in cancer cells and its effect in the invasion of the extracellular matrix
cites work: Primitives for the manipulation of three-dimensional subdivisions
cites work: COMPACT REPRESENTATIONS OF SIMPLICIAL MESHES IN TWO AND THREE DIMENSIONS
cites work: A class of data structures for 2-D and 3-D adaptive mesh refinement
cites work: Q3909958
cites work: On the design of CGAL a computational geometry algorithms library
cites work: Variational generation of prismatic boundary-layer meshes for biomedical computing
cites work: p4est: scalable algorithms for parallel adaptive mesh refinement on forests of octrees
cites work: Recursive algorithms for distributed forests of octrees
cites work: deal.II—A general-purpose object-oriented finite element library
cites work: Algorithms and data structures for massively parallel generic adaptive finite element codes
cites work: The \textsc{Dune} framework: basic concepts and recent developments
cites work: A generic grid interface for parallel and adaptive scientific computing. I: Abstract framework
cites work: A generic grid interface for parallel and adaptive scientific computing. II: Implementation and tests in DUNE
cites work: A comparative study of the turbulent Rayleigh–Taylor instability using high-resolution three-dimensional numerical simulations: The Alpha-Group collaboration
cites work: LAPACK Users' Guide
cites work: Efficient implementation of essentially nonoscillatory shock-capturing schemes
cites work: Flux vector splitting of the inviscid gasdynamic equations with application to finite-difference methods
cites work: Riemann Solvers and Numerical Methods for Fluid Dynamics
cites work: Q4422694
cites work: MATHEMATICAL MODELLING OF CANCER CELL INVASION OF TISSUE: THE ROLE OF THE UROKINASE PLASMINOGEN ACTIVATION SYSTEM
cites work: ON THE FOUNDATIONS OF CANCER MODELLING: SELECTED TOPICS, SPECULATIONS, AND PERSPECTIVES
cites work: Cancer Modelling and Simulation
cites work: Global existence for a go-or-grow multiscale model for tumor invasion with therapy
cites work: Mathematical modeling of leukemogenesis and cancer stem cell dynamics
cites work: On the proportion of cancer stem cells in a tumour

An adaptive rectangular mesh administration and refinement technique with application in cancer invasion models (cites work)
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An adaptive rectangular mesh administration and refinement technique with application in cancer invasion models (cites work)
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An adaptive rectangular mesh administration and refinement technique with application in cancer invasion models (cites work)
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An adaptive rectangular mesh administration and refinement technique with application in cancer invasion models (DOI)
DOI: 10.1016/J.CAM.2022.114442

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An adaptive rectangular mesh administration and refinement technique with application in cancer invasion models (copyright license)
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