aPEAR
type: Item
instance of: R package
description: Simplify pathway enrichment analysis results by detecting clusters of similar pathways and visualizing it as an enrichment network, where nodes and edges describe the pathways and similarity between them, respectively. This reduces the redundancy of the overlapping pathways and helps to notice the most important biological themes in the data (Kerseviciute and Gordevicius (2023) <doi:10.1101/2023.03.28.534514>).
last update: 2023-06-12T00:00:00Z
software version identifier: 1.0.0
author: Ieva Kerseviciute
maintained by: Ieva Kerseviciute
copyright license: MIT license
copyright license: File License
imports: arules
imports: bayesbio
imports: data.table
imports: dplyr
imports: igraph
imports: lsa
imports: MCL
imports: reshape2
imports: tibble
imports: utils
imports: stats
imports: methods
imports: ggplot2
imports: ggrepel
imports: ggforce
cites work: aPEAR:an R package for autonomous visualisation of pathway enrichment networks
CRAN project: aPEAR
MaRDI profile type: MaRDI software profile
programmed in: R
depends on software: R
description: Advanced Pathway Enrichment Analysis Representation