grandR
type: Item
instance of: R package
software version identifier: 0.2.1
software version identifier: 0.2.2
software version identifier: 0.2.0
software version identifier: 0.2.5
maintained by: Florian Erhard
CRAN project: grandR
programmed in: R
last update: 2024-02-15T00:00:00Z
description: Nucleotide conversion sequencing experiments have been developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such experiments require specialized tools for primary processing such as GRAND-SLAM, (see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for downstream analyses. 'grandR' provides a comprehensive toolbox for quality control, kinetic modeling, differential gene expression analysis and visualization of such data.
author: Florian Erhard
copyright license: Apache License
imports: stats
imports: Matrix
imports: rlang
imports: ggplot2
imports: grDevices
imports: patchwork
imports: RCurl
imports: plyr
imports: parallel
imports: reshape2
imports: MASS
imports: scales
imports: cowplot
imports: minpack.lm
imports: lfc
imports: labeling
imports: methods
imports: utils
imports: numDeriv
cites work: Dissecting newly transcribed and old RNA using GRAND-SLAM
depends on software: R
MaRDI profile type: MaRDI software profile
description: Comprehensive Analysis of Nucleotide Conversion Sequencing Data