cbioportalR
type: Item
instance of: R package
software version identifier: 1.0.1
software version identifier: 1.0.0
software version identifier: 1.1.0
maintained by: Karissa Whiting
CRAN project: cbioportalR
programmed in: R
last update: 2023-10-05T00:00:00Z
description: Provides R users with direct access to genomic and clinical data from the 'cBioPortal' web resource via user-friendly functions that wrap 'cBioPortal's' existing API endpoints <https://www.cbioportal.org/api/swagger-ui/index.html>. Users can browse and query genomic data on mutations, copy number alterations and fusions, as well as data on tumor mutational burden ('TMB'), microsatellite instability status ('MSI'), 'FACETS' and select clinical data points (depending on the study). See <https://www.cbioportal.org/> and Gao et al., (2013) <doi:10.1126/scisignal.2004088> for more information on the cBioPortal web resource.
author: Karissa Whiting
copyright license: MIT license
copyright license: File License
imports: httr
imports: tibble
imports: purrr
imports: magrittr
imports: rlang
imports: glue
imports: jsonlite
imports: tidyr
imports: dplyr
imports: stringr
imports: cli
cites work: Integrative Analysis of Complex Cancer Genomics and Clinical Profiles Using the cBioPortal
depends on software: R
MaRDI profile type: MaRDI software profile
description: Browse and Query Clinical and Genomic Data from cBioPortal