scaper (Q5980862)
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Single Cell Transcriptomics-Level Cytokine Activity Prediction and Estimation
| Language | Label | Description | Also known as |
|---|---|---|---|
| English | scaper |
Single Cell Transcriptomics-Level Cytokine Activity Prediction and Estimation |
Statements
Generates cell-level cytokine activity estimates using relevant information from gene sets constructed with the 'CytoSig' and the 'Reactome' databases and scored using the modified 'Variance-adjusted Mahalanobis (VAM)' framework for single-cell RNA-sequencing (scRNA-seq) data. 'CytoSig' database is described in: Jiang at al., (2021) <doi:10.1038/s41592-021-01274-5>. 'Reactome' database is described in: Gillespie et al., (2021) <doi:10.1093/nar/gkab1028>. The 'VAM' method is outlined in: Frost (2020) <doi:10.1093/nar/gkaa582>.
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19 October 2023
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expanded from: GPL (≥ 2) (English)
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