Spectral analysis of phylogenetic data
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bipartitionclosest tree selectionconjugate spectrumedge weightsfast Hadamard transformHadamard conjugationinverse Hadamard conjugationleast squares best fitnucleotide sequencesoptimality selection procedurephylogenetic treeprobabilities of state changesequence and distance datasequence spectrumtree spectrumtwo-state character sequencesunobserved changes in the dataweighted phylogenetic tree
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Cites work
- A combinatorial description of the closest tree algorithm for finding evolutionary trees
- Branch and bound algorithms to determine minimal evolutionary trees
- Distributions on bicoloured evolutionary trees
- Hadamard matrices and their applications
- scientific article; zbMATH DE number 3448387 (Why is no real title available?)
- Invariants of phylogenies in a simple case with discrete states
- Number theory in science and communication. With applications in cryptography, physics, digital information, computing, and self- similarity.
- Taxonomy with confidence
Cited in
(25)- Significance of the length of the shortest tree
- Spectral analysis and a closest tree method for genetic sequences
- Phylogenetic invariants for the general Markov model of sequence mutation
- A Fourier inversion formula for evolutionary trees
- Toric geometry of the Cavender-Farris-Neyman model with a molecular clock
- Embeddability and rate identifiability of Kimura 2-parameter matrices
- Analytic solutions of maximum likelihood on forks of four taxa
- Cases in which ancestral maximum likelihood will be confusingly misleading
- Consistency and convergence rate of phylogenetic inference via regularization
- Phylogenetic invariants for stationary base composition
- Invertibility of the TKF model of sequence evolution
- Do tree split probabilities determine the branch lengths?
- A discrete Fourier analysis for evolutionary trees.
- Remarks on Hadamard conjugation and combinatorial phylogenetics
- Spectral method for reconstructing phylogenetic tree
- Examining Protein Structure and Similarities by Spectral Analysis Technique
- Hadamard conjugation: an analytic tool for phylogenetics
- Analyzing and visualizing sequence and distance data using SPLITSTREE
- Bootstrapping phylogenetic trees: theory and methods
- Maximum likelihood estimation for unrooted 3-leaf trees: an analytic solution for the CFN model
- The link between segregation and phylogenetic diversity
- Maximal determinants of matrices over the roots of unity
- Analysis of a data matrix and a graph: metagenomic data and the phylogenetic tree
- Statistics for phylogenetic trees
- Analytic solutions for three taxon ML trees with variable rates across sites
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