SurprisalAnalysis
From MaRDI portal
Description
Implements Surprisal analysis for gene expression data such as RNA-seq or microarray experiments. Surprisal analysis is an information-theoretic method that decomposes gene expression data into a baseline state and constraint-associated deviations, capturing coordinated gene expression patterns under different biological conditions. References: Kravchenko-Balasha N. et al. (2014) <doi:10.1371/journal.pone.0108549>. Zadran S. et al. (2014) <doi:10.1073/pnas.1414714111>. Su Y. et al. (2019) <doi:10.1371/journal.pcbi.1007034>. Bogaert K. A. et al. (2018) <doi:10.1371/journal.pone.0195142>.
- Computational Surprisal Analysis Speeds-Up Genomic Characterization of Cancer Processes
- Phenotypic heterogeneity and evolution of melanoma cells associated with targeted therapy resistance
- Surprisal analysis characterizes the free energy time course of cancer cells undergoing epithelial-to-mesenchymal transition
- Surprisal analysis of genome-wide transcript profiling identifies differentially expressed genes and pathways associated with four growth conditions in the microalga Chlamydomonas
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