Time-synchronized clustering of gene expression trajectories

DOI10.1093/BIOSTATISTICS/KXN011MaRDI QIDQ3304907zbMATH OpenOpenAlexWikidataFDO

Authors Rong Tang, Hans-Georg Müller

Publication date 4 August 2020

Published in Biostatistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1093/biostatistics/kxn011

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10)

Recommendations

• Trajectory clustering: a non-parametric method for grouping gene expression time courses, with applications to mammary development
• Clustering of time-course gene expression data using functional data analysis
• Cluster analysis of gene expression dynamics
• A cluster algorithm for time-course gene expression profile based on affinity propagation

Cites work

• Curve Registration
• Dynamic programming algorithm optimization for spoken word recognition
• Flexible smoothing with B-splines and penalties. With comments and a rejoinder by the authors
• Hierarchical clustering schemes
• Nonparametric maximum likelihood estimation of the structural mean of a sample of curves
• Pairwise curve synchronization for functional data
• Searching for Structure in Curve Sample
• Self-Modelling Warping Functions

Cited in

(17)

• Bayesian clustering of replicated time-course gene expression data with weak signals
• A Bayesian method for simultaneous registration and clustering of functional observations
• A joint design for functional data with application to scheduling ultrasound scans
• Clustering of unevenly sampled gene expression time-series data
• Functional data analysis of amplitude and phase variation
• Benchmarking different clustering algorithms on functional data
• Clustering of time-course gene expression data using functional data analysis
• Self-organizing maps with statistical phase synchronization (SOMPS) for analyzing cell cycle-specific gene expression data
• A cluster algorithm for time-course gene expression profile based on affinity propagation
• A multi-purpose time series data standardization method
• Time ordering of gene coexpression
• A growth curve approach to analyzing multiple-valued expression data
• Trajectory clustering: a non-parametric method for grouping gene expression time courses, with applications to mammary development
• Mean shift-based clustering for misaligned functional data
• Identifying cluster number for subspace projected functional data clustering
• Core shape modelling of a set of curves
• \(k\)-mean alignment for curve clustering

This page was built for publication: Time-synchronized clustering of gene expression trajectories

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q3304907)