Toward revealing protein function: identifying biologically relevant clusters with graph spectral methods

DOI10.1016/B978-0-12-814066-6.00012-XMaRDI QIDQ4627748zbMATH OpenOpenAlexFDO

Authors R. Davies, Urmi Ghosh-Dastidar, Widodo Samyono, Jeff R. Knisley

Publication date 11 March 2019

Published in Algebraic and Combinatorial Computational Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/b978-0-12-814066-6.00012-x

zbMATH Keywords

graph partitioning algorithmprotein functionprotein tertiary structurespectral clustering

Mathematics Subject Classification ID

Applications of graph theory (05C90) Protein sequences, DNA sequences (92D20)

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(5)

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• Extension and robustness of transitivity clustering for protein-protein interaction network analysis
• Identifying Functional Families of Trajectories in Biological Pathways by Soft Clustering: Application to TGF- \beta Signaling
• Rough Sets, Fuzzy Sets, Data Mining, and Granular Computing
• Spectral clustering and its use in bioinformatics

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