Reproduce figure 3 from Gaskin, Conrad et al.
This is a workflow for reproducing Figure 3 from the paper "Neural parameter calibration and uncertainty quantification for epidemic forecasting". The workflow automatically fetches the RKI COVID-19 case numbers for Berlin (03/2020–10/2020) from the MaRDI data store via DOIP, and generates a time series plot of daily new cases which is stored as an png image.
Workflow Components
| Name | Type | Description |
|---|---|---|
| RKI covid case numbers 03/2020 to 10/2020 | data set |
What is a RO-Crate?
A RO-Crate is a standardized research object package that bundles a workflow together with rich machine-readable metadata. Each RO-Crate contains:
- the workflow definition file (e.g. using Snakemake)
- a ro-crate-metadata.json file describing the workflow's purpose, inputs, outputs, and provenance
- references to tool dependencies, software versions, and execution environments
- persistent identifiers linking to related resources such as publications, datasets, or other workflow registries
This ensures that the workflow can be reliably shared, cited, validated, and re-executed in a reproducible manner. RO-Crates follow the RO-Crate specification and are natively supported by various platforms.
More information can be found here.
This page was built for workflow: Reproduce figure 3 from Gaskin, Conrad et al.
