Workflow:6830877/rocrate-overview

RO-Crate Contents

DAG

Workflow DAG

Snakemake Rules

Rule	Input	Output
download_input	—	input/rki_corona_cases_2020.csv
generate_figure	input/rki_corona_cases_2020.csv	output/figure3.png

README.MD

Figure Reproduction Workflow

Reproduces figure 3 from the paper Neural parameter calibration and uncertainty quantification for epidemic forecasting.

Requirements

• Snakemake
• Python 3
• Dependencies (will be installed by Conda)
  • Pandas
  • matplotlib

Usage

snakemake -s my_workflow.smk --cores 1 --use-conda --verbose

Input

• RKI covid case numbers 03/2020 to 10/2020 (Item:Q6830878)

Output

• output/figure3.png — reproduction of figure 3

Files

• envs/environment.yaml
• my_workflow.smk
• script.py
• README.md