SeuratObject (Q73885): Difference between revisions

← Older edit

@@ Property / last update @@
-November 2022Timestamp +2022-11-07T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2022-11-07T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update: 7 November 2022 / rank @@
-Normal rank
@@ Property / imports @@
-grid
@@ Property / imports: grid / rank @@
-Normal rank
@@ Property / imports @@
-Matrix
@@ Property / imports: Matrix / rank @@
-Normal rank
@@ Property / imports @@
-methods
@@ Property / imports: methods / rank @@
-Normal rank
@@ Property / imports @@
-progressr
@@ Property / imports: progressr / rank @@
-Normal rank
@@ Property / imports @@
-Rcpp
@@ Property / imports: Rcpp / rank @@
-Normal rank
@@ Property / imports @@
-rlang
@@ Property / imports: rlang / rank @@
-Normal rank
@@ Property / imports @@
-stats
@@ Property / imports: stats / rank @@
-Normal rank
@@ Property / imports @@
-tools
@@ Property / imports: tools / rank @@
-Normal rank
@@ Property / imports @@
-utils
@@ Property / imports: utils / rank @@
-Normal rank
@@ Property / cites work @@
-Spatial reconstruction of single-cell gene expression data
-Normal rank
@@ Property / cites work @@
-Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
-Normal rank
@@ Property / cites work @@
-Comprehensive Integration of Single-Cell Data
@@ Property / cites work: Comprehensive Integration of Single-Cell Data / rank @@
-Normal rank
@@ Property / software version identifier @@
+.0.0
@@ Property / software version identifier: 4.0.0 / rank @@
+Normal rank
@@ Property / software version identifier: 4.0.0 / qualifier @@
+publication date: 15 January 2021Timestamp +2021-01-15T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2021-01-15T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.0.1
@@ Property / software version identifier: 4.0.1 / rank @@
+Normal rank
@@ Property / software version identifier: 4.0.1 / qualifier @@
+publication date: 8 May 2021Timestamp +2021-05-08T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
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-Timestamp
++2021-05-08T00:00:00Z
-Timezone
++00:00
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+Gregorian
-Precision
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@@ Property / software version identifier @@
+.0.2
@@ Property / software version identifier: 4.0.2 / rank @@
+Normal rank
@@ Property / software version identifier: 4.0.2 / qualifier @@
+publication date: 9 June 2021Timestamp +2021-06-09T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
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-Timestamp
++2021-06-09T00:00:00Z
-Timezone
++00:00
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+Gregorian
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@@ Property / software version identifier @@
+.0.3
@@ Property / software version identifier: 4.0.3 / rank @@
+Normal rank
@@ Property / software version identifier: 4.0.3 / qualifier @@
+publication date: 10 November 2021Timestamp +2021-11-10T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
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-Timestamp
++2021-11-10T00:00:00Z
-Timezone
++00:00
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+Gregorian
-Precision
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@@ Property / software version identifier @@
+.0.4
@@ Property / software version identifier: 4.0.4 / rank @@
+Normal rank
@@ Property / software version identifier: 4.0.4 / qualifier @@
+publication date: 23 November 2021Timestamp +2021-11-23T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
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-Timestamp
++2021-11-23T00:00:00Z
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++00:00
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+Gregorian
-Precision
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@@ Property / software version identifier @@
+.1.0
@@ Property / software version identifier: 4.1.0 / rank @@
+Normal rank
@@ Property / software version identifier: 4.1.0 / qualifier @@
+publication date: 1 May 2022Timestamp +2022-05-01T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
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-Timestamp
++2022-05-01T00:00:00Z
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++00:00
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+Gregorian
-Precision
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@@ Property / software version identifier @@
+.1.1
@@ Property / software version identifier: 4.1.1 / rank @@
+Normal rank
@@ Property / software version identifier: 4.1.1 / qualifier @@
+publication date: 29 August 2022Timestamp +2022-08-29T00:00:00Z
Timezone +00:00
Calendar Gregorian
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-Timestamp
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@@ Property / software version identifier @@
+.1.2
@@ Property / software version identifier: 4.1.2 / rank @@
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@@ Property / software version identifier: 4.1.2 / qualifier @@
+publication date: 20 September 2022Timestamp +2022-09-20T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
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-Timestamp
++2022-09-20T00:00:00Z
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@@ Property / software version identifier @@
+.1.4
@@ Property / software version identifier: 4.1.4 / rank @@
+Normal rank
@@ Property / software version identifier: 4.1.4 / qualifier @@
+publication date: 27 September 2023Timestamp +2023-09-27T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
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After 0
-Timestamp
++2023-09-27T00:00:00Z
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@@ Property / software version identifier @@
+.0.0
@@ Property / software version identifier: 5.0.0 / rank @@
+Normal rank
@@ Property / software version identifier: 5.0.0 / qualifier @@
+publication date: 26 October 2023Timestamp +2023-10-26T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
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After 0
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++2023-10-26T00:00:00Z
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@@ Property / software version identifier @@
+.0.1
@@ Property / software version identifier: 5.0.1 / rank @@
+Normal rank
@@ Property / software version identifier: 5.0.1 / qualifier @@
+publication date: 17 November 2023Timestamp +2023-11-17T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
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-Timestamp
++2023-11-17T00:00:00Z
-Timezone
++00:00
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+Gregorian
-Precision
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 Before
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@@ Property / last update @@
+November 2023Timestamp +2023-11-17T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-11-17T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
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@@ Property / last update: 17 November 2023 / rank @@
+Normal rank
@@ Property / description @@
+Defines S4 classes for single-cell genomic data and associated  information, such as dimensionality reduction embeddings, nearest-neighbor  graphs, and spatially-resolved coordinates. Provides data access methods and  R-native hooks to ensure the Seurat object is familiar to other R users. See  Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>,  Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>,  and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>,  Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and  Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for  more details.
+Normal rank
@@ Property / author @@
+Rahul Satija
@@ Property / author: Rahul Satija / rank @@
+Normal rank
@@ Property / author @@
+Paul J Hoffman
@@ Property / author: Paul J Hoffman / rank @@
+Normal rank
@@ Property / author @@
+Yuhan Hao
@@ Property / author: Yuhan Hao / rank @@
+Normal rank
@@ Property / author @@
+Austin Hartman
@@ Property / author: Austin Hartman / rank @@
+Normal rank
@@ Property / author @@
+Gesmira Molla
@@ Property / author: Gesmira Molla / rank @@
+Normal rank
@@ Property / author @@
+Andrew Butler
@@ Property / author: Andrew Butler / rank @@
+Normal rank
@@ Property / author @@
+Tim Stuart
@@ Property / author: Tim Stuart / rank @@
+Normal rank
@@ Property / copyright license @@
+MIT license
@@ Property / copyright license: MIT license / rank @@
+Normal rank
@@ Property / copyright license @@
+File License
@@ Property / copyright license: File License / rank @@
+Normal rank
@@ Property / copyright license: File License / qualifier @@
+URL: https://cran.r-project.org/web/packages/SeuratObject/LICENSE
@@ Property / depends on software @@
+sp
@@ Property / depends on software: sp / rank @@
+Normal rank
@@ Property / depends on software: sp / qualifier @@
+software version identifier: ≥ 1.5.0
@@ Property / depends on software @@
+R
@@ Property / depends on software: R / rank @@
+Normal rank
@@ Property / depends on software: R / qualifier @@
+software version identifier: ≥ 4.0.0
@@ Property / imports @@
+future
@@ Property / imports: future / rank @@
+Normal rank
@@ Property / imports @@
+future.apply
@@ Property / imports: future.apply / rank @@
+Normal rank
@@ Property / imports @@
+grDevices
@@ Property / imports: grDevices / rank @@
+Normal rank
@@ Property / imports @@
+grid
@@ Property / imports: grid / rank @@
+Normal rank
@@ Property / imports @@
+Matrix
@@ Property / imports: Matrix / rank @@
+Normal rank
@@ Property / imports: Matrix / qualifier @@
+software version identifier: ≥ 1.6.3
@@ Property / imports @@
+methods
@@ Property / imports: methods / rank @@
+Normal rank
@@ Property / imports @@
+progressr
@@ Property / imports: progressr / rank @@
+Normal rank
@@ Property / imports @@
+Rcpp
@@ Property / imports: Rcpp / rank @@
+Normal rank
@@ Property / imports: Rcpp / qualifier @@
+software version identifier: ≥ 1.0.5
@@ Property / imports @@
+rlang
@@ Property / imports: rlang / rank @@
+Normal rank
@@ Property / imports: rlang / qualifier @@
+software version identifier: ≥ 0.4.7
@@ Property / imports @@
+stats
@@ Property / imports: stats / rank @@
+Normal rank
@@ Property / imports @@
+tools
@@ Property / imports: tools / rank @@
+Normal rank
@@ Property / imports @@
+utils
@@ Property / imports: utils / rank @@
+Normal rank
@@ Property / imports @@
+spam
@@ Property / imports: spam / rank @@
+Normal rank
@@ Property / imports @@
+lifecycle
@@ Property / imports: lifecycle / rank @@
+Normal rank
@@ Property / imports @@
+generics
@@ Property / imports: generics / rank @@
+Normal rank
@@ Property / cites work @@
+Spatial reconstruction of single-cell gene expression data
+Normal rank
@@ Property / cites work @@
+Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
+Normal rank
@@ Property / cites work @@
+Comprehensive Integration of Single-Cell Data
@@ Property / cites work: Comprehensive Integration of Single-Cell Data / rank @@
+Normal rank
@@ Property / cites work @@
+Integrated analysis of multimodal single-cell data
+Normal rank
@@ Property / cites work @@
+Dictionary learning for integrative, multimodal, and scalable single-cell analysis
+Normal rank
@@ Property / MaRDI profile type @@
+MaRDI software profile
@@ Property / MaRDI profile type: MaRDI software profile / rank @@
+Normal rank
@@ links / mardi / name / links / mardi / name @@
+Software:73885

Latest revision as of 19:55, 12 March 2024

Data Structures for Single Cell Data

Language	Label	Description	Also known as
English	SeuratObject	Data Structures for Single Cell Data

Statements

software version identifier

4.1.3

publication date

7 November 2022

0 references

4.0.0

publication date

15 January 2021

0 references

4.0.1

publication date

8 May 2021

0 references

4.0.2

publication date

9 June 2021

0 references

4.0.3

publication date

10 November 2021

0 references

4.0.4

publication date

23 November 2021

0 references

4.1.0

publication date

1 May 2022

0 references

4.1.1

publication date

29 August 2022

0 references

4.1.2

publication date

20 September 2022

0 references

4.1.4

publication date

27 September 2023

0 references

5.0.0

publication date

26 October 2023

0 references

5.0.1

publication date

17 November 2023

0 references

0 references

0 references

0 references

0 references

17 November 2023

0 references

description

Defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, Hao Y, Hao S, et al (2021) <doi:10.1016/j.cell.2021.04.048> and Hao Y, et al (2023) <doi:10.1101/2022.02.24.481684> for more details.

0 references

0 references

0 references

0 references

0 references

0 references