AnanseSeurat (Q79450): Difference between revisions

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@@ Property / programmed in @@
-R
@@ Property / programmed in: R / rank @@
-Normal rank
@@ Property / last update @@
-January 2023Timestamp +2023-01-25T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-01-25T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update: 25 January 2023 / rank @@
-Normal rank
@@ Property / author @@
-Jos Smits
@@ Property / author: Jos Smits / rank @@
-Normal rank
@@ Property / author @@
-Huiqing Jo Zhou
@@ Property / author: Huiqing Jo Zhou / rank @@
-Normal rank
@@ Property / copyright license @@
-Apache License
@@ Property / copyright license: Apache License / rank @@
-Normal rank
@@ Property / copyright license: Apache License / qualifier @@
-edition/version: ≥ 2 (English)
@@ Property / depends on software @@
-R
@@ Property / depends on software: R / rank @@
-Normal rank
@@ Property / depends on software: R / qualifier @@
-software version identifier: ≥ 3.50
@@ Property / imports @@
-dplyr
@@ Property / imports: dplyr / rank @@
-Normal rank
@@ Property / imports @@
-ggplot2
@@ Property / imports: ggplot2 / rank @@
-Normal rank
@@ Property / imports @@
-ggpubr
@@ Property / imports: ggpubr / rank @@
-Normal rank
@@ Property / imports @@
-magrittr
@@ Property / imports: magrittr / rank @@
-Normal rank
@@ Property / imports @@
-patchwork
@@ Property / imports: patchwork / rank @@
-Normal rank
@@ Property / imports @@
-png
@@ Property / imports: png / rank @@
-Normal rank
@@ Property / imports @@
-purrr
@@ Property / imports: purrr / rank @@
-Normal rank
@@ Property / imports @@
-rlang
@@ Property / imports: rlang / rank @@
-Normal rank
@@ Property / imports @@
-Seurat
@@ Property / imports: Seurat / rank @@
-Normal rank
@@ Property / imports @@
-stringr
@@ Property / imports: stringr / rank @@
-Normal rank
@@ Property / imports @@
-utils
@@ Property / imports: utils / rank @@
-Normal rank
@@ Property / cites work @@
-ANANSE: an enhancer network-based computational approach for predicting key transcription factors in cell fate determination
-Normal rank
@@ Property / software version identifier @@
+.2.0
@@ Property / software version identifier: 1.2.0 / rank @@
+Normal rank
@@ Property / software version identifier: 1.2.0 / qualifier @@
+publication date: 11 November 2023Timestamp +2023-11-11T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
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-Timestamp
++2023-11-11T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
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@@ Property / programmed in @@
+R
@@ Property / programmed in: R / rank @@
+Normal rank
@@ Property / last update @@
+November 2023Timestamp +2023-11-11T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-11-11T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update: 11 November 2023 / rank @@
+Normal rank
@@ Property / description @@
+Enables gene regulatory network (GRN) analysis on single cell clusters,    using the GRN analysis software 'ANANSE', Xu et al.(2021) <doi:10.1093/nar/gkab598>.    Export data from 'Seurat' objects, for GRN analysis by 'ANANSE'     implemented in 'snakemake'. Finally, incorporate results for visualization     and interpretation.
+Normal rank
@@ Property / author @@
+Jos Smits
@@ Property / author: Jos Smits / rank @@
+Normal rank
@@ Property / author @@
+Huiqing Jo Zhou
@@ Property / author: Huiqing Jo Zhou / rank @@
+Normal rank
@@ Property / copyright license @@
+Apache License
@@ Property / copyright license: Apache License / rank @@
+Normal rank
@@ Property / copyright license: Apache License / qualifier @@
+edition/version: ≥ 2 (English)
@@ Property / imports @@
+dplyr
@@ Property / imports: dplyr / rank @@
+Normal rank
@@ Property / imports @@
+ggplot2
@@ Property / imports: ggplot2 / rank @@
+Normal rank
@@ Property / imports @@
+ggpubr
@@ Property / imports: ggpubr / rank @@
+Normal rank
@@ Property / imports @@
+magrittr
@@ Property / imports: magrittr / rank @@
+Normal rank
@@ Property / imports @@
+patchwork
@@ Property / imports: patchwork / rank @@
+Normal rank
@@ Property / imports @@
+png
@@ Property / imports: png / rank @@
+Normal rank
@@ Property / imports @@
+purrr
@@ Property / imports: purrr / rank @@
+Normal rank
@@ Property / imports @@
+rlang
@@ Property / imports: rlang / rank @@
+Normal rank
@@ Property / imports @@
+Seurat
@@ Property / imports: Seurat / rank @@
+Normal rank
@@ Property / imports @@
+stringr
@@ Property / imports: stringr / rank @@
+Normal rank
@@ Property / imports @@
+utils
@@ Property / imports: utils / rank @@
+Normal rank
@@ Property / cites work @@
+ANANSE: an enhancer network-based computational approach for predicting key transcription factors in cell fate determination
+Normal rank
@@ Property / depends on software @@
+R
@@ Property / depends on software: R / rank @@
+Normal rank
@@ Property / depends on software: R / qualifier @@
+software version identifier: ≥ 3.50
@@ Property / MaRDI profile type @@
+MaRDI software profile
@@ Property / MaRDI profile type: MaRDI software profile / rank @@
+Normal rank
@@ links / mardi / name / links / mardi / name @@
+Software:79450

Latest revision as of 19:55, 12 March 2024

Construct ANANSE GRN-Analysis Seurat

Language	Label	Description	Also known as
English	AnanseSeurat	Construct ANANSE GRN-Analysis Seurat

Statements

instance of

R package

0 references

software version identifier

1.1.0

publication date

25 January 2023

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1.2.0

publication date

11 November 2023

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0 references

0 references

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11 November 2023

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description

Enables gene regulatory network (GRN) analysis on single cell clusters, using the GRN analysis software 'ANANSE', Xu et al.(2021) <doi:10.1093/nar/gkab598>. Export data from 'Seurat' objects, for GRN analysis by 'ANANSE' implemented in 'snakemake'. Finally, incorporate results for visualization and interpretation.

0 references

0 references

0 references

≥ 2 (English)

0 references

imports