cellpypes (Q108147): Difference between revisions

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-R
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-May 2022Timestamp +2022-05-19T00:00:00Z
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@@ Property / last update: 19 May 2022 / rank @@
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-Felix Frauhammer
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-GNU General Public License
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-cellpypes: Cell Type Pipes for R
@@ Property / cites work: cellpypes: Cell Type Pipes for R / rank @@
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+.3.0
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+Annotate single-cell RNA sequencing data manually based on    marker gene thresholds.    Find cell type rules (gene+threshold) through exploration,    use the popular piping operator '%>%' to reconstruct complex    cell type hierarchies.    'cellpypes' models technical noise to find positive and negative cells for    a given expression threshold and returns cell type labels or pseudobulks.    Cite this package as Frauhammer (2022) <doi:10.5281/zenodo.6555728> and    visit <https://github.com/FelixTheStudent/cellpypes> for tutorials and newest    features.
+Normal rank
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+Felix Frauhammer
@@ Property / author: Felix Frauhammer / rank @@
+Normal rank
@@ Property / copyright license @@
+GNU General Public License
@@ Property / copyright license: GNU General Public License / rank @@
+Normal rank
@@ Property / copyright license: GNU General Public License / qualifier @@
+edition/version: ≥ 3 (English)
@@ Property / imports @@
+scUtils
@@ Property / imports: scUtils / rank @@
+Normal rank
@@ Property / imports @@
+ggplot2
@@ Property / imports: ggplot2 / rank @@
+Normal rank
@@ Property / imports @@
+Matrix
@@ Property / imports: Matrix / rank @@
+Normal rank
@@ Property / imports @@
+rlang
@@ Property / imports: rlang / rank @@
+Normal rank
@@ Property / imports @@
+viridis
@@ Property / imports: viridis / rank @@
+Normal rank
@@ Property / imports @@
+cowplot
@@ Property / imports: cowplot / rank @@
+Normal rank
@@ Property / imports @@
+dplyr
@@ Property / imports: dplyr / rank @@
+Normal rank
@@ Property / imports @@
+scales
@@ Property / imports: scales / rank @@
+Normal rank
@@ Property / imports @@
+methods
@@ Property / imports: methods / rank @@
+Normal rank
@@ Property / imports @@
+scattermore
@@ Property / imports: scattermore / rank @@
+Normal rank
@@ Property / cites work @@
+cellpypes: Cell Type Pipes for R
@@ Property / cites work: cellpypes: Cell Type Pipes for R / rank @@
+Normal rank
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+R
@@ Property / depends on software: R / rank @@
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+Software:108147

Latest revision as of 19:56, 12 March 2024

Cell Type Pipes for Single-Cell RNA Sequencing Data

Language	Label	Description	Also known as
English	cellpypes	Cell Type Pipes for Single-Cell RNA Sequencing Data

Statements

instance of

R package

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software version identifier

0.1.3

publication date

19 May 2022

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0.3.0

publication date

27 January 2024

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27 January 2024

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description

Annotate single-cell RNA sequencing data manually based on marker gene thresholds. Find cell type rules (gene+threshold) through exploration, use the popular piping operator '%>%' to reconstruct complex cell type hierarchies. 'cellpypes' models technical noise to find positive and negative cells for a given expression threshold and returns cell type labels or pseudobulks. Cite this package as Frauhammer (2022) <doi:10.5281/zenodo.6555728> and visit <https://github.com/FelixTheStudent/cellpypes> for tutorials and newest features.

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author

Felix Frauhammer

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copyright license

GNU General Public License

edition/version

≥ 3 (English)

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imports

scUtils

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