DCLEAR (Q75358): Difference between revisions

← Older edit

@@ Property / last update @@
-February 2023Timestamp +2023-02-16T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-02-16T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update: 16 February 2023 / rank @@
-Normal rank
@@ Property / author @@
-Wuming Gong
@@ Property / author: Wuming Gong / rank @@
-Normal rank
@@ Property / maintained by @@
-Il-youp Kwak
@@ Property / maintained by: Il-youp Kwak / rank @@
-Normal rank
@@ Property / copyright license @@
-GNU General Public License, version 3.0
@@ Property / copyright license: GNU General Public License, version 3.0 / rank @@
-Normal rank
@@ Property / imports @@
-igraph
@@ Property / imports: igraph / rank @@
-Normal rank
@@ Property / imports @@
-methods
@@ Property / imports: methods / rank @@
-Normal rank
@@ Property / imports @@
-BiocGenerics
@@ Property / imports: BiocGenerics / rank @@
-Normal rank
@@ Property / imports @@
-BiocParallel
@@ Property / imports: BiocParallel / rank @@
-Normal rank
@@ Property / imports @@
-dplyr
@@ Property / imports: dplyr / rank @@
-Normal rank
@@ Property / imports @@
-Matrix
@@ Property / imports: Matrix / rank @@
-Normal rank
@@ Property / imports @@
-matrixStats
@@ Property / imports: matrixStats / rank @@
-Normal rank
@@ Property / imports @@
-ape
@@ Property / imports: ape / rank @@
-Normal rank
@@ Property / imports @@
-phangorn
@@ Property / imports: phangorn / rank @@
-Normal rank
@@ Property / imports @@
-Rcpp
@@ Property / imports: Rcpp / rank @@
-Normal rank
@@ Property / imports @@
-purrr
@@ Property / imports: purrr / rank @@
-Normal rank
@@ Property / imports @@
-stringr
@@ Property / imports: stringr / rank @@
-Normal rank
@@ Property / imports @@
-tidyr
@@ Property / imports: tidyr / rank @@
-Normal rank
@@ Property / imports @@
-rBayesianOptimization
@@ Property / imports: rBayesianOptimization / rank @@
-Normal rank
@@ Property / imports @@
-rlang
@@ Property / imports: rlang / rank @@
-Normal rank
@@ Property / cites work @@
-Benchmarked approaches for reconstruction of in vitro cell lineages and in silico models of C. elegans and M. musculus developmental trees
-Normal rank
@@ Property / cites work @@
-Single cell lineage reconstruction using distance-based algorithms and the R package, DCLEAR
-Normal rank
@@ Property / depends on software @@
-R
@@ Property / depends on software: R / rank @@
-Normal rank
@@ Property / depends on software @@
-tensorflow
@@ Property / depends on software: tensorflow / rank @@
-Normal rank
@@ Property / software version identifier @@
+.0.0
@@ Property / software version identifier: 1.0.0 / rank @@
+Normal rank
@@ Property / software version identifier: 1.0.0 / qualifier @@
+publication date: 15 July 2021Timestamp +2021-07-15T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2021-07-15T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.0.8
@@ Property / software version identifier: 1.0.8 / rank @@
+Normal rank
@@ Property / software version identifier: 1.0.8 / qualifier @@
+publication date: 3 September 2021Timestamp +2021-09-03T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2021-09-03T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.0.11
@@ Property / software version identifier: 1.0.11 / rank @@
+Normal rank
@@ Property / software version identifier: 1.0.11 / qualifier @@
+publication date: 30 November 2022Timestamp +2022-11-30T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2022-11-30T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / software version identifier @@
+.0.13
@@ Property / software version identifier: 1.0.13 / rank @@
+Normal rank
@@ Property / software version identifier: 1.0.13 / qualifier @@
+publication date: 14 September 2023Timestamp +2023-09-14T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-09-14T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update @@
+September 2023Timestamp +2023-09-14T00:00:00Z
Timezone +00:00
Calendar Gregorian
Precision 1 day
Before 0
After 0
-Timestamp
++2023-09-14T00:00:00Z
-Timezone
++00:00
-Calendar
+Gregorian
-Precision
+day
 Before
 After
@@ Property / last update: 14 September 2023 / rank @@
+Normal rank
@@ Property / maintained by @@
+Il-Youp Kwak
@@ Property / maintained by: Il-Youp Kwak / rank @@
+Normal rank
@@ Property / description @@
+R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020.         References: Gong et al. (2021) <doi:10.1016/j.cels.2021.05.008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>.
+Normal rank
@@ Property / author @@
+Il-Youp Kwak
@@ Property / author: Il-Youp Kwak / rank @@
+Normal rank
@@ Property / author @@
+Wuming Gong
@@ Property / author: Wuming Gong / rank @@
+Normal rank
@@ Property / copyright license @@
+GNU General Public License, version 3.0
@@ Property / copyright license: GNU General Public License, version 3.0 / rank @@
+Normal rank
@@ Property / depends on software @@
+tensorflow
@@ Property / depends on software: tensorflow / rank @@
+Normal rank
@@ Property / depends on software: tensorflow / qualifier @@
+software version identifier: ≥ 2.2.0
@@ Property / depends on software @@
+R
@@ Property / depends on software: R / rank @@
+Normal rank
@@ Property / depends on software: R / qualifier @@
+software version identifier: ≥ 4.1.0
@@ Property / imports @@
+BiocParallel
@@ Property / imports: BiocParallel / rank @@
+Normal rank
@@ Property / imports @@
+dplyr
@@ Property / imports: dplyr / rank @@
+Normal rank
@@ Property / imports @@
+Matrix
@@ Property / imports: Matrix / rank @@
+Normal rank
@@ Property / imports @@
+matrixStats
@@ Property / imports: matrixStats / rank @@
+Normal rank
@@ Property / imports @@
+ape
@@ Property / imports: ape / rank @@
+Normal rank
@@ Property / imports @@
+phangorn
@@ Property / imports: phangorn / rank @@
+Normal rank
@@ Property / imports @@
+Rcpp
@@ Property / imports: Rcpp / rank @@
+Normal rank
@@ Property / imports @@
+igraph
@@ Property / imports: igraph / rank @@
+Normal rank
@@ Property / imports @@
+methods
@@ Property / imports: methods / rank @@
+Normal rank
@@ Property / imports @@
+purrr
@@ Property / imports: purrr / rank @@
+Normal rank
@@ Property / imports @@
+stringr
@@ Property / imports: stringr / rank @@
+Normal rank
@@ Property / imports @@
+tidyr
@@ Property / imports: tidyr / rank @@
+Normal rank
@@ Property / imports @@
+rBayesianOptimization
@@ Property / imports: rBayesianOptimization / rank @@
+Normal rank
@@ Property / imports @@
+rlang
@@ Property / imports: rlang / rank @@
+Normal rank
@@ Property / imports @@
+BiocGenerics
@@ Property / imports: BiocGenerics / rank @@
+Normal rank
@@ Property / cites work @@
+Benchmarked approaches for reconstruction of in vitro cell lineages and in silico models of C. elegans and M. musculus developmental trees
+Normal rank
@@ Property / cites work @@
+Single cell lineage reconstruction using distance-based algorithms and the R package, DCLEAR
+Normal rank
@@ Property / MaRDI profile type @@
+MaRDI software profile
@@ Property / MaRDI profile type: MaRDI software profile / rank @@
+Normal rank
@@ links / mardi / name / links / mardi / name @@
+Software:75358

Latest revision as of 18:56, 12 March 2024

Distance Based Cell Lineage Reconstruction

Language	Label	Description	Also known as
English	DCLEAR	Distance Based Cell Lineage Reconstruction

Statements

instance of

R package

0 references

software version identifier

1.0.12

publication date

16 February 2023

0 references

1.0.0

publication date

15 July 2021

0 references

1.0.8

publication date

3 September 2021

0 references

1.0.11

publication date

30 November 2022

0 references

1.0.13

publication date

14 September 2023

0 references

programmed in

R

0 references

last update

14 September 2023

0 references

maintained by

Il-Youp Kwak

0 references

description

R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020. References: Gong et al. (2021) <doi:10.1016/j.cels.2021.05.008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>.

0 references

0 references

0 references

GNU General Public License, version 3.0

0 references

depends on software

tensorflow

software version identifier