Platypus (Q100283): Difference between revisions

← Older edit

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+We present 'Platypus', an open-source software platform providing a user-friendly interface to investigate B-cell receptor and T-cell receptor repertoires from scSeq experiments. 'Platypus' provides a framework to automate and ease the analysis of single-cell immune repertoires while also incorporating transcriptional information involving unsupervised clustering, gene expression and gene ontology. This R version of 'Platypus' is part of the 'ePlatypus' ecosystem for computational analysis of immunogenomics data: Yermanos et al. (2021) <doi:10.1093/nargab/lqab023>, Cotet et al. (2023) <doi:10.1093/bioinformatics/btad553>.
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+Alexander Yermanos
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+Platypus: an open-access software for integrating lymphocyte single-cell immune repertoires with transcriptomes
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+ePlatypus: an ecosystem for computational analysis of immunogenomics data
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+Software:100283

Latest revision as of 19:56, 12 March 2024

Single-Cell Immune Repertoire and Gene Expression Analysis

Language	Label	Description	Also known as
English	Platypus	Single-Cell Immune Repertoire and Gene Expression Analysis

Statements

instance of

R package

0 references

software version identifier

3.4.1

publication date

15 August 2022

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3.2.3

publication date

19 October 2021

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3.3.2

publication date

28 January 2022

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3.3.5

publication date

11 April 2022

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3.5.0

publication date

21 February 2024

0 references

0 references

0 references

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21 February 2024

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description

We present 'Platypus', an open-source software platform providing a user-friendly interface to investigate B-cell receptor and T-cell receptor repertoires from scSeq experiments. 'Platypus' provides a framework to automate and ease the analysis of single-cell immune repertoires while also incorporating transcriptional information involving unsupervised clustering, gene expression and gene ontology. This R version of 'Platypus' is part of the 'ePlatypus' ecosystem for computational analysis of immunogenomics data: Yermanos et al. (2021) <doi:10.1093/nargab/lqab023>, Cotet et al. (2023) <doi:10.1093/bioinformatics/btad553>.

0 references

author

Alexander Yermanos

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copyright license

GNU General Public License, version 2.0

0 references

imports

Biostrings

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cowplot

0 references