GUniFrac (Q21987): Difference between revisions

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@@ Property / last update @@
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+A suite of methods for powerful and robust microbiome data analysis including data normalization, data simulation, community-level association testing and differential abundance analysis. It implements generalized UniFrac distances,  Geometric Mean of Pairwise Ratios (GMPR) normalization, semiparametric data simulator, distance-based statistical methods, and feature-based statistical methods. The distance-based statistical methods include three extensions of PERMANOVA: (1) PERMANOVA using the Freedman-Lane permutation scheme, (2) PERMANOVA omnibus test using multiple matrices, and  (3) analytical approach to approximating PERMANOVA p-value. Feature-based statistical methods include linear model-based methods for differential abundance analysis of zero-inflated high-dimensional compositional data.
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+Software:21987

Latest revision as of 15:30, 21 March 2024

Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis

Language	Label	Description	Also known as
English	GUniFrac	Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate Methods for Microbiome Data Analysis

Statements

instance of

R package

0 references

software version identifier

1.7

publication date

23 October 2022

0 references

1.0

publication date

28 April 2012

0 references

1.1

publication date

13 February 2018

0 references

1.2

publication date

3 May 2021

0 references

1.3

publication date

18 August 2021

0 references

1.4

publication date

10 November 2021

0 references

1.5

publication date

6 April 2022

0 references

1.6

publication date

17 May 2022

0 references

1.8

publication date

14 September 2023

0 references

0 references

0 references

MaRDI software profile

0 references

last update

14 September 2023

0 references

description

A suite of methods for powerful and robust microbiome data analysis including data normalization, data simulation, community-level association testing and differential abundance analysis. It implements generalized UniFrac distances, Geometric Mean of Pairwise Ratios (GMPR) normalization, semiparametric data simulator, distance-based statistical methods, and feature-based statistical methods. The distance-based statistical methods include three extensions of PERMANOVA: (1) PERMANOVA using the Freedman-Lane permutation scheme, (2) PERMANOVA omnibus test using multiple matrices, and (3) analytical approach to approximating PERMANOVA p-value. Feature-based statistical methods include linear model-based methods for differential abundance analysis of zero-inflated high-dimensional compositional data.

0 references

author

Jun Chen

0 references

copyright license

GNU General Public License, version 3.0

0 references

imports

Rcpp

software version identifier

≥ 0.12.13

0 references