nat (Q27822): Difference between revisions

← Older edit

@@ Property / last update @@
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+NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D    biological image data, especially traced neurons. Reads and writes 3D images    in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf    format. Traced neurons can be imported from and written to SWC and 'Amira'    LineSet and SkeletonGraph formats. These data can then be visualised in 3D    via 'rgl', manipulated including applying calculated registrations, e.g.    using the 'CMTK' registration suite, and analysed. There is also a simple    representation for neurons that have been subjected to 3D skeletonisation    but not formally traced; this allows morphological comparison between    neurons including searches and clustering (via the 'nat.nblast' extension    package).
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+Software:27822

Latest revision as of 16:13, 21 March 2024

NeuroAnatomy Toolbox for Analysis of 3D Image Data

Language	Label	Description	Also known as
English	nat	NeuroAnatomy Toolbox for Analysis of 3D Image Data

Statements

instance of

R package

0 references

software version identifier

1.8.21

publication date

28 January 2023

0 references

1.0.1

publication date

7 February 2014

0 references

1.0

publication date

4 February 2014

0 references

1.4.5

publication date

28 March 2014

0 references

1.4.6

publication date

30 March 2014

0 references

1.4.10

publication date

30 April 2014

0 references

1.5.12

publication date

21 August 2014

0 references

1.6.4

publication date

10 February 2015

0 references

1.6.6

publication date

28 May 2015

0 references

1.7.0

publication date

1 July 2015

0 references

1.8.1

publication date

30 December 2015

0 references

1.8.4

publication date

18 July 2016

0 references

1.8.7

publication date

10 November 2016

0 references

1.8.9

publication date

8 May 2017

0 references

1.8.11

publication date

12 November 2017

0 references

1.8.13

publication date

22 August 2019

0 references

1.8.14

publication date

7 February 2020

0 references

1.8.16

publication date

22 September 2020

0 references

1.8.17

publication date

3 September 2021

0 references

1.8.18

publication date

6 September 2021

0 references

1.8.19

publication date

6 April 2022

0 references

1.8.21

publication date

29 January 2023

0 references

1.8.22

publication date

7 June 2023

0 references

1.8.23

publication date

25 August 2023

0 references

1.8.24

publication date

5 February 2024

0 references

0 references

0 references

5 February 2024

0 references

description

NeuroAnatomy Toolbox (nat) enables analysis and visualisation of 3D biological image data, especially traced neurons. Reads and writes 3D images in NRRD and 'Amira' AmiraMesh formats and reads surfaces in 'Amira' hxsurf format. Traced neurons can be imported from and written to SWC and 'Amira' LineSet and SkeletonGraph formats. These data can then be visualised in 3D via 'rgl', manipulated including applying calculated registrations, e.g. using the 'CMTK' registration suite, and analysed. There is also a simple representation for neurons that have been subjected to 3D skeletonisation but not formally traced; this allows morphological comparison between neurons including searches and clustering (via the 'nat.nblast' extension package).

0 references

0 references

0 references

GNU General Public License, version 3.0

0 references

depends on software

rgl

software version identifier