rstpm2 (Q28936): Difference between revisions
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Removed claim: imports (P585): deSolve (Q16672) |
Swh import (talk | contribs) SWHID from Software Heritage |
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Property / last update: 8 March 2023 / rank | |||||||||||||||
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Property / cites work: Parametric and penalized generalized survival models / rank | |||||||||||||||
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Property / cites work: Generalized survival models for correlated time-to-event data / rank | |||||||||||||||
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publication date: 26 July 2015
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publication date: 24 February 2016
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publication date: 13 April 2016
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publication date: 9 October 2016
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publication date: 31 August 2017
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publication date: 20 September 2017
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publication date: 29 May 2018
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publication date: 1 November 2018
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publication date: 17 January 2019
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publication date: 15 October 2019
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publication date: 6 November 2019
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publication date: 3 March 2021
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publication date: 19 April 2022
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publication date: 10 May 2022
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publication date: 14 July 2022
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publication date: 17 October 2022
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publication date: 7 January 2023
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publication date: 28 February 2023
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publication date: 5 December 2023
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5 December 2023
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R implementation of generalized survival models (GSMs), smooth accelerated failure time (AFT) models and Markov multi-state models. For the GSMs, g(S(t|x))=eta(t,x) for a link function g, survival S at time t with covariates x and a linear predictor eta(t,x). The main assumption is that the time effect(s) are smooth <doi:10.1177/0962280216664760>. For fully parametric models with natural splines, this re-implements Stata's 'stpm2' function, which are flexible parametric survival models developed by Royston and colleagues. We have extended the parametric models to include any smooth parametric smoothers for time. We have also extended the model to include any smooth penalized smoothers from the 'mgcv' package, using penalized likelihood. These models include left truncation, right censoring, interval censoring, gamma frailties and normal random effects <doi:10.1002/sim.7451>, and copulas. For the smooth AFTs, S(t|x) = S_0(t*eta(t,x)), where the baseline survival function S_0(t)=exp(-exp(eta_0(t))) is modelled for natural splines for eta_0, and the time-dependent cumulative acceleration factor eta(t,x)=\int_0^t exp(eta_1(u,x)) du for log acceleration factor eta_1(u,x). The Markov multi-state models allow for a range of models with smooth transitions to predict transition probabilities, length of stay, utilities and costs, with differences, ratios and standardisation. | |||||||||||||||
Property / description: R implementation of generalized survival models (GSMs), smooth accelerated failure time (AFT) models and Markov multi-state models. For the GSMs, g(S(t|x))=eta(t,x) for a link function g, survival S at time t with covariates x and a linear predictor eta(t,x). The main assumption is that the time effect(s) are smooth <doi:10.1177/0962280216664760>. For fully parametric models with natural splines, this re-implements Stata's 'stpm2' function, which are flexible parametric survival models developed by Royston and colleagues. We have extended the parametric models to include any smooth parametric smoothers for time. We have also extended the model to include any smooth penalized smoothers from the 'mgcv' package, using penalized likelihood. These models include left truncation, right censoring, interval censoring, gamma frailties and normal random effects <doi:10.1002/sim.7451>, and copulas. For the smooth AFTs, S(t|x) = S_0(t*eta(t,x)), where the baseline survival function S_0(t)=exp(-exp(eta_0(t))) is modelled for natural splines for eta_0, and the time-dependent cumulative acceleration factor eta(t,x)=\int_0^t exp(eta_1(u,x)) du for log acceleration factor eta_1(u,x). The Markov multi-state models allow for a range of models with smooth transitions to predict transition probabilities, length of stay, utilities and costs, with differences, ratios and standardisation. / rank | |||||||||||||||
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Property / author: Mark Clements / rank | |||||||||||||||
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Property / author: Benjamin Christoffersen / rank | |||||||||||||||
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Property / cites work: Parametric and penalized generalized survival models / rank | |||||||||||||||
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point in time: 21 December 2023
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Latest revision as of 19:16, 21 March 2024
Smooth Survival Models, Including Generalized Survival Models
Language | Label | Description | Also known as |
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English | rstpm2 |
Smooth Survival Models, Including Generalized Survival Models |
Statements
5 December 2023
0 references
R implementation of generalized survival models (GSMs), smooth accelerated failure time (AFT) models and Markov multi-state models. For the GSMs, g(S(t|x))=eta(t,x) for a link function g, survival S at time t with covariates x and a linear predictor eta(t,x). The main assumption is that the time effect(s) are smooth <doi:10.1177/0962280216664760>. For fully parametric models with natural splines, this re-implements Stata's 'stpm2' function, which are flexible parametric survival models developed by Royston and colleagues. We have extended the parametric models to include any smooth parametric smoothers for time. We have also extended the model to include any smooth penalized smoothers from the 'mgcv' package, using penalized likelihood. These models include left truncation, right censoring, interval censoring, gamma frailties and normal random effects <doi:10.1002/sim.7451>, and copulas. For the smooth AFTs, S(t|x) = S_0(t*eta(t,x)), where the baseline survival function S_0(t)=exp(-exp(eta_0(t))) is modelled for natural splines for eta_0, and the time-dependent cumulative acceleration factor eta(t,x)=\int_0^t exp(eta_1(u,x)) du for log acceleration factor eta_1(u,x). The Markov multi-state models allow for a range of models with smooth transitions to predict transition probabilities, length of stay, utilities and costs, with differences, ratios and standardisation.
0 references
21 December 2023
0 references