adjclust (Q39716): Difference between revisions

← Older edit

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+Implements a constrained version of hierarchical agglomerative     clustering, in which each observation is associated to a position, and only     adjacent clusters can be merged. Typical application fields in     bioinformatics include Genome-Wide Association Studies or Hi-C data     analysis, where the similarity between items is a decreasing function of     their genomic distance. Taking advantage of this feature, the implemented     algorithm is time and memory efficient. This algorithm is described in     Ambroise et al (2019) <doi:10.1186/s13015-019-0157-4>.
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+Adjacency-constrained hierarchical clustering of a band similarity matrix with application to genomics
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Latest revision as of 21:14, 21 March 2024

Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix

Language	Label	Description	Also known as
English	adjclust	Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix

Statements

instance of

R package

0 references

software version identifier

0.6.6

publication date

14 September 2022

0 references

0.6.7

publication date

27 April 2023

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0.5.2

publication date

18 October 2017

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0.5.6

publication date

8 February 2018

0 references

0.5.7

publication date

26 September 2018

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0.5.9

publication date

10 December 2019

0 references

0.5.99

publication date

18 June 2020

0 references

0.6.3

publication date

26 July 2021

0 references

0.6.4

publication date

31 March 2022

0 references

0.6.5

publication date

18 August 2022

0 references

0.6.6

publication date

15 September 2022

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0.6.8

publication date

13 January 2024

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0.6.9

publication date

8 February 2024

0 references

0 references

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8 February 2024

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description

Implements a constrained version of hierarchical agglomerative clustering, in which each observation is associated to a position, and only adjacent clusters can be merged. Typical application fields in bioinformatics include Genome-Wide Association Studies or Hi-C data analysis, where the similarity between items is a decreasing function of their genomic distance. Taking advantage of this feature, the implemented algorithm is time and memory efficient. This algorithm is described in Ambroise et al (2019) <doi:10.1186/s13015-019-0157-4>.

0 references

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