survPen (Q41715): Difference between revisions

From MaRDI portal
Importer (talk | contribs)
Swh import (talk | contribs)
SWHID from Software Heritage
 
(5 intermediate revisions by 4 users not shown)
Property / last update
11 September 2021
Timestamp+2021-09-11T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
Before0
After0
 
Property / last update: 11 September 2021 / rank
Normal rank
 
Property / software version identifier
 
1.0.0
Property / software version identifier: 1.0.0 / rank
 
Normal rank
Property / software version identifier: 1.0.0 / qualifier
 
publication date: 27 February 2019
Timestamp+2019-02-27T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
Before0
After0
Property / software version identifier
 
1.0.1
Property / software version identifier: 1.0.1 / rank
 
Normal rank
Property / software version identifier: 1.0.1 / qualifier
 
publication date: 1 March 2019
Timestamp+2019-03-01T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
Before0
After0
Property / software version identifier
 
1.1.0
Property / software version identifier: 1.1.0 / rank
 
Normal rank
Property / software version identifier: 1.1.0 / qualifier
 
publication date: 2 May 2019
Timestamp+2019-05-02T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
Before0
After0
Property / software version identifier
 
1.2.0
Property / software version identifier: 1.2.0 / rank
 
Normal rank
Property / software version identifier: 1.2.0 / qualifier
 
publication date: 29 August 2019
Timestamp+2019-08-29T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
Before0
After0
Property / software version identifier
 
1.3.0
Property / software version identifier: 1.3.0 / rank
 
Normal rank
Property / software version identifier: 1.3.0 / qualifier
 
publication date: 3 February 2020
Timestamp+2020-02-03T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
Before0
After0
Property / software version identifier
 
1.5.0
Property / software version identifier: 1.5.0 / rank
 
Normal rank
Property / software version identifier: 1.5.0 / qualifier
 
publication date: 25 May 2020
Timestamp+2020-05-25T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
Before0
After0
Property / software version identifier
 
1.5.1
Property / software version identifier: 1.5.1 / rank
 
Normal rank
Property / software version identifier: 1.5.1 / qualifier
 
publication date: 25 September 2020
Timestamp+2020-09-25T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
Before0
After0
Property / software version identifier
 
1.6.0
Property / software version identifier: 1.6.0 / rank
 
Normal rank
Property / software version identifier: 1.6.0 / qualifier
 
publication date: 13 September 2023
Timestamp+2023-09-13T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
Before0
After0
Property / last update
 
13 September 2023
Timestamp+2023-09-13T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
Before0
After0
Property / last update: 13 September 2023 / rank
 
Normal rank
Property / description
 
Fits hazard and excess hazard models with multidimensional penalized splines allowing for time-dependent effects, non-linear effects and interactions between several continuous covariates. In survival and net survival analysis, in addition to modelling the effect of time (via the baseline hazard), one has often to deal with several continuous covariates and model their functional forms, their time-dependent effects, and their interactions. Model specification becomes therefore a complex problem and penalized regression splines represent an appealing solution to that problem as splines offer the required flexibility while penalization limits overfitting issues. Current implementations of penalized survival models can be slow or unstable and sometimes lack some key features like taking into account expected mortality to provide net survival and excess hazard estimates. In contrast, survPen provides an automated, fast, and stable implementation (thanks to explicit calculation of the derivatives of the likelihood) and offers a unified framework for multidimensional penalized hazard and excess hazard models. survPen may be of interest to those who 1) analyse any kind of time-to-event data: mortality, disease relapse, machinery breakdown, unemployment, etc 2) wish to describe the associated hazard and to understand which predictors impact its dynamics. See Fauvernier et al. (2019a) <doi:10.21105/joss.01434> for an overview of the package and Fauvernier et al. (2019b) <doi:10.1111/rssc.12368> for the method.
Property / description: Fits hazard and excess hazard models with multidimensional penalized splines allowing for time-dependent effects, non-linear effects and interactions between several continuous covariates. In survival and net survival analysis, in addition to modelling the effect of time (via the baseline hazard), one has often to deal with several continuous covariates and model their functional forms, their time-dependent effects, and their interactions. Model specification becomes therefore a complex problem and penalized regression splines represent an appealing solution to that problem as splines offer the required flexibility while penalization limits overfitting issues. Current implementations of penalized survival models can be slow or unstable and sometimes lack some key features like taking into account expected mortality to provide net survival and excess hazard estimates. In contrast, survPen provides an automated, fast, and stable implementation (thanks to explicit calculation of the derivatives of the likelihood) and offers a unified framework for multidimensional penalized hazard and excess hazard models. survPen may be of interest to those who 1) analyse any kind of time-to-event data: mortality, disease relapse, machinery breakdown, unemployment, etc 2) wish to describe the associated hazard and to understand which predictors impact its dynamics. See Fauvernier et al. (2019a) <doi:10.21105/joss.01434> for an overview of the package and Fauvernier et al. (2019b) <doi:10.1111/rssc.12368> for the method. / rank
 
Normal rank
Property / author
 
Property / author: Mathieu Fauvernier / rank
 
Normal rank
Property / author
 
Property / author: Laurent Roche / rank
 
Normal rank
Property / author
 
Property / author: Laurent Remontet / rank
 
Normal rank
Property / copyright license
 
Property / copyright license: GNU General Public License, version 3.0 / rank
 
Normal rank
Property / copyright license
 
Property / copyright license: File License / rank
 
Normal rank
Property / copyright license: File License / qualifier
 
Property / imports
 
Property / imports: statmod / rank
 
Normal rank
Property / imports
 
Property / imports: stats / rank
 
Normal rank
Property / imports
 
Property / imports: Rcpp / rank
 
Normal rank
Property / imports: Rcpp / qualifier
 
Property / cites work
 
Property / cites work: survPen: an R package for hazard and excess hazard modelling with multidimensional penalized splines / rank
 
Normal rank
Property / cites work
 
Property / cites work: Multi-Dimensional Penalized Hazard Model with Continuous Covariates: Applications for Studying Trends and Social Inequalities in Cancer Survival / rank
 
Normal rank
Property / depends on software
 
Property / depends on software: R / rank
 
Normal rank
Property / depends on software: R / qualifier
 
Property / source code repository
 
Property / source code repository: https://github.com/cran/survPen / rank
 
Normal rank
Property / Software Heritage ID
 
Property / Software Heritage ID: swh:1:snp:5bf9e5de9e222e13ccf2ca35a6cb88826f6f5202 / rank
 
Normal rank
Property / Software Heritage ID: swh:1:snp:5bf9e5de9e222e13ccf2ca35a6cb88826f6f5202 / qualifier
 
Property / Software Heritage ID: swh:1:snp:5bf9e5de9e222e13ccf2ca35a6cb88826f6f5202 / qualifier
 
point in time: 10 October 2023
Timestamp+2023-10-10T00:00:00Z
Timezone+00:00
CalendarGregorian
Precision1 day
Before0
After0
links / mardi / namelinks / mardi / name
 

Latest revision as of 21:56, 21 March 2024

Multidimensional Penalized Splines for Survival and Net Survival Models
Language Label Description Also known as
English
survPen
Multidimensional Penalized Splines for Survival and Net Survival Models

    Statements

    0 references
    1.5.2
    11 September 2021
    0 references
    1.0.0
    27 February 2019
    0 references
    1.0.1
    1 March 2019
    0 references
    1.1.0
    2 May 2019
    0 references
    1.2.0
    29 August 2019
    0 references
    1.3.0
    3 February 2020
    0 references
    1.5.0
    25 May 2020
    0 references
    1.5.1
    25 September 2020
    0 references
    1.6.0
    13 September 2023
    0 references
    0 references
    13 September 2023
    0 references
    Fits hazard and excess hazard models with multidimensional penalized splines allowing for time-dependent effects, non-linear effects and interactions between several continuous covariates. In survival and net survival analysis, in addition to modelling the effect of time (via the baseline hazard), one has often to deal with several continuous covariates and model their functional forms, their time-dependent effects, and their interactions. Model specification becomes therefore a complex problem and penalized regression splines represent an appealing solution to that problem as splines offer the required flexibility while penalization limits overfitting issues. Current implementations of penalized survival models can be slow or unstable and sometimes lack some key features like taking into account expected mortality to provide net survival and excess hazard estimates. In contrast, survPen provides an automated, fast, and stable implementation (thanks to explicit calculation of the derivatives of the likelihood) and offers a unified framework for multidimensional penalized hazard and excess hazard models. survPen may be of interest to those who 1) analyse any kind of time-to-event data: mortality, disease relapse, machinery breakdown, unemployment, etc 2) wish to describe the associated hazard and to understand which predictors impact its dynamics. See Fauvernier et al. (2019a) <doi:10.21105/joss.01434> for an overview of the package and Fauvernier et al. (2019b) <doi:10.1111/rssc.12368> for the method.
    0 references
    0 references
    0 references
    0 references
    0 references
    0 references
    0 references

    Identifiers