ashr (Q45642): Difference between revisions
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Swh import (talk | contribs) SWHID from Software Heritage |
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Property / source code repository: https://github.com/cran/ashr / rank | |||||||||||||||
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Property / Software Heritage ID: swh:1:snp:4c0203bb8fcbdcc603256107662869b7a1af78fe / rank | |||||||||||||||
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Property / Software Heritage ID: swh:1:snp:4c0203bb8fcbdcc603256107662869b7a1af78fe / qualifier | |||||||||||||||
Property / Software Heritage ID: swh:1:snp:4c0203bb8fcbdcc603256107662869b7a1af78fe / qualifier | |||||||||||||||
point in time: 30 August 2023
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Latest revision as of 01:11, 22 March 2024
Methods for Adaptive Shrinkage, using Empirical Bayes
Language | Label | Description | Also known as |
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English | ashr |
Methods for Adaptive Shrinkage, using Empirical Bayes |
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21 August 2023
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The R package 'ashr' implements an Empirical Bayes approach for large-scale hypothesis testing and false discovery rate (FDR) estimation based on the methods proposed in M. Stephens, 2016, "False discovery rates: a new deal", <doi:10.1093/biostatistics/kxw041>. These methods can be applied whenever two sets of summary statistics—estimated effects and standard errors—are available, just as 'qvalue' can be applied to previously computed p-values. Two main interfaces are provided: ash(), which is more user-friendly; and ash.workhorse(), which has more options and is geared toward advanced users. The ash() and ash.workhorse() also provides a flexible modeling interface that can accommodate a variety of likelihoods (e.g., normal, Poisson) and mixture priors (e.g., uniform, normal).
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