MSCquartets (Q46232): Difference between revisions
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Analyzing Gene Tree Quartets under the Multi-Species Coalescent | |||||||||||||||
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publication date: 10 December 2022
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publication date: 16 December 2019
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publication date: 7 January 2021
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publication date: 19 April 2022
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publication date: 12 June 2023
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publication date: 27 October 2023
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Property / maintained by: John A. Rhodes / rank | |||||||||||||||
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Property / CRAN project: MSCquartets / rank | |||||||||||||||
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27 October 2023
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Methods for analyzing and using quartets displayed on a collection of gene trees, primarily to make inferences about the species tree or network under the multi-species coalescent model. These include quartet hypothesis tests for the model, as developed by Mitchell et al. (2019) <doi:10.1214/19-EJS1576>, simplex plots of quartet concordance factors as presented by Allman et al. (2020) <doi:10.1101/2020.02.13.948083>, species tree inference methods based on quartet distances of Rhodes (2019) <doi:10.1109/TCBB.2019.2917204> and Yourdkhani and Rhodes (2019) <doi:10.1007/s11538-020-00773-4>, and the NANUQ algorithm for inference of level-1 species networks of Allman et al. (2019) <doi:10.1186/s13015-019-0159-2>. Software announcement by Rhodes et al. (2020) <doi:10.1093/bioinformatics/btaa868>. | |||||||||||||||
Property / description: Methods for analyzing and using quartets displayed on a collection of gene trees, primarily to make inferences about the species tree or network under the multi-species coalescent model. These include quartet hypothesis tests for the model, as developed by Mitchell et al. (2019) <doi:10.1214/19-EJS1576>, simplex plots of quartet concordance factors as presented by Allman et al. (2020) <doi:10.1101/2020.02.13.948083>, species tree inference methods based on quartet distances of Rhodes (2019) <doi:10.1109/TCBB.2019.2917204> and Yourdkhani and Rhodes (2019) <doi:10.1007/s11538-020-00773-4>, and the NANUQ algorithm for inference of level-1 species networks of Allman et al. (2019) <doi:10.1186/s13015-019-0159-2>. Software announcement by Rhodes et al. (2020) <doi:10.1093/bioinformatics/btaa868>. / rank | |||||||||||||||
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Property / author: Elizabeth S. Allman / rank | |||||||||||||||
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Property / author: Hector Banos / rank | |||||||||||||||
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Property / author: Jonathan D. Mitchell / rank | |||||||||||||||
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Property / author: John A. Rhodes / rank | |||||||||||||||
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software version identifier: ≥ 3.5.0 | |||||||||||||||
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software version identifier: ≥ 1.0.10 | |||||||||||||||
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Property / cites work: Hypothesis testing near singularities and boundaries / rank | |||||||||||||||
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Property / cites work: Gene tree discord, simplex plots, and statistical tests under the coalescent / rank | |||||||||||||||
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Property / cites work: Topological Metrizations of Trees, and New Quartet Methods of Tree Inference / rank | |||||||||||||||
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Property / cites work: Inferring Metric Trees from Weighted Quartets via an Intertaxon Distance / rank | |||||||||||||||
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Property / cites work: NANUQ: a method for inferring species networks from gene trees under the coalescent model / rank | |||||||||||||||
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Property / cites work: MSCquartets 1.0: quartet methods for species trees and networks under the multispecies coalescent model in R / rank | |||||||||||||||
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point in time: 9 November 2023
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Latest revision as of 00:28, 22 March 2024
Analyzing Gene Tree Quartets under the Multi-Species Coalescent
Language | Label | Description | Also known as |
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English | MSCquartets |
Analyzing Gene Tree Quartets under the Multi-Species Coalescent |
Statements
27 October 2023
0 references
Methods for analyzing and using quartets displayed on a collection of gene trees, primarily to make inferences about the species tree or network under the multi-species coalescent model. These include quartet hypothesis tests for the model, as developed by Mitchell et al. (2019) <doi:10.1214/19-EJS1576>, simplex plots of quartet concordance factors as presented by Allman et al. (2020) <doi:10.1101/2020.02.13.948083>, species tree inference methods based on quartet distances of Rhodes (2019) <doi:10.1109/TCBB.2019.2917204> and Yourdkhani and Rhodes (2019) <doi:10.1007/s11538-020-00773-4>, and the NANUQ algorithm for inference of level-1 species networks of Allman et al. (2019) <doi:10.1186/s13015-019-0159-2>. Software announcement by Rhodes et al. (2020) <doi:10.1093/bioinformatics/btaa868>.
0 references
0 references