Computational Translation Framework Identifies Biochemical Reaction Networks with Special Topologies and Their Long-Term Dynamics (Q6103923): Difference between revisions

Latest revision as of 07:41, 1 August 2024

scientific article; zbMATH DE number 7692230

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English	Computational Translation Framework Identifies Biochemical Reaction Networks with Special Topologies and Their Long-Term Dynamics	scientific article; zbMATH DE number 7692230

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instance of

scholarly article

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title

Computational Translation Framework Identifies Biochemical Reaction Networks with Special Topologies and Their Long-Term Dynamics (English)

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zbMATH Open document ID

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SIAM Journal on Applied Mathematics

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publication date

5 June 2023

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full work available at URL

https://arxiv.org/abs/2212.01171

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Mathematics Subject Classification ID

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stochastic reaction networks

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deterministic reaction networks

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network translation

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stationary distribution

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steady state

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continuous-time Markov chain

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irreducibility

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MaRDI profile type

MaRDI publication profile

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OpenAlex ID

W4379106460

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cites work

A Proof of the Global Attractor Conjecture in the Single Linkage Class Case

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Stochastically modeled weakly reversible reaction networks with a single linkage class

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Tier structure of strongly endotactic reaction networks

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Product-form stationary distributions for deficiency zero networks with non-mass action kinetics

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Product-form stationary distributions for deficiency zero chemical reaction networks

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Some Network Conditions for Positive Recurrence of Stochastically Modeled Reaction Networks

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Stochastic Analysis of Biochemical Systems

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Deficiency zero for random reaction networks under a stochastic block model framework

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Prevalence of deficiency-zero reaction networks in an Erdös–Rényi framework

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Existence of Positive Steady States for Weakly Reversible Mass-Action Systems

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Product-Form Poisson-Like Distributions and Complex Balanced Reaction Systems

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Persistence and Permanence of Mass-Action and Power-Law Dynamical Systems

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Accuracy of Multiscale Reduction for Stochastic Reaction Systems

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Foundations of chemical reaction network theory

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Computational Identification of Irreducible State-Spaces for Stochastic Reaction Networks

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Stationary Distributions and Condensation in Autocatalytic Reaction Networks

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Translated chemical reaction networks

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Computing weakly reversible deficiency zero network translations using elementary flux modes

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A deficiency-based approach to parametrizing positive equilibria of biochemical reaction systems

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Generalized Mass Action Systems: Complex Balancing Equilibria and Sign Vectors of the Stoichiometric and Kinetic-Order Subspaces

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Generalized Mass-Action Systems and Positive Solutions of Polynomial Equations with Real and Symbolic Exponents (Invited Talk)

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Markov Chains

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Dynamical properties of discrete reaction networks

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Design principles for robust biochemical reaction networks: what works, what cannot work, and what might almost work

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Depth-First Search and Linear Graph Algorithms

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Network translation and steady-state properties of chemical reaction systems

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Sitelinks

Mathematics(1 entry)

mardi Publication:6103923

@@ Property / OpenAlex ID @@
+W4379106460
@@ Property / OpenAlex ID: W4379106460 / rank @@
+Normal rank
@@ Property / cites work @@
+A Proof of the Global Attractor Conjecture in the Single Linkage Class Case
+Normal rank
@@ Property / cites work @@
+Stochastically modeled weakly reversible reaction networks with a single linkage class
+Normal rank
@@ Property / cites work @@
+Tier structure of strongly endotactic reaction networks
+Normal rank
@@ Property / cites work @@
+Product-form stationary distributions for deficiency zero networks with non-mass action kinetics
+Normal rank
@@ Property / cites work @@
+Product-form stationary distributions for deficiency zero chemical reaction networks
+Normal rank
@@ Property / cites work @@
+Some Network Conditions for Positive Recurrence of Stochastically Modeled Reaction Networks
+Normal rank
@@ Property / cites work @@
+Stochastic Analysis of Biochemical Systems
@@ Property / cites work: Stochastic Analysis of Biochemical Systems / rank @@
+Normal rank
@@ Property / cites work @@
+Deficiency zero for random reaction networks under a stochastic block model framework
+Normal rank
@@ Property / cites work @@
+Prevalence of deficiency-zero reaction networks in an Erdös–Rényi framework
+Normal rank
@@ Property / cites work @@
+Existence of Positive Steady States for Weakly Reversible Mass-Action Systems
+Normal rank
@@ Property / cites work @@
+Product-Form Poisson-Like Distributions and Complex Balanced Reaction Systems
+Normal rank
@@ Property / cites work @@
+Persistence and Permanence of Mass-Action and Power-Law Dynamical Systems
+Normal rank
@@ Property / cites work @@
+Accuracy of Multiscale Reduction for Stochastic Reaction Systems
+Normal rank
@@ Property / cites work @@
+Foundations of chemical reaction network theory
@@ Property / cites work: Foundations of chemical reaction network theory / rank @@
+Normal rank
@@ Property / cites work @@
+Computational Identification of Irreducible State-Spaces for Stochastic Reaction Networks
+Normal rank
@@ Property / cites work @@
+Stationary Distributions and Condensation in Autocatalytic Reaction Networks
+Normal rank
@@ Property / cites work @@
+Translated chemical reaction networks
@@ Property / cites work: Translated chemical reaction networks / rank @@
+Normal rank
@@ Property / cites work @@
+Computing weakly reversible deficiency zero network translations using elementary flux modes
+Normal rank
@@ Property / cites work @@
+A deficiency-based approach to parametrizing positive equilibria of biochemical reaction systems
+Normal rank
@@ Property / cites work @@
+Generalized Mass Action Systems: Complex Balancing Equilibria and Sign Vectors of the Stoichiometric and Kinetic-Order Subspaces
+Normal rank
@@ Property / cites work @@
+Generalized Mass-Action Systems and Positive Solutions of Polynomial Equations with Real and Symbolic Exponents (Invited Talk)
+Normal rank
@@ Property / cites work @@
+Markov Chains
@@ Property / cites work: Markov Chains / rank @@
+Normal rank
@@ Property / cites work @@
+Dynamical properties of discrete reaction networks
+Normal rank
@@ Property / cites work @@
+Design principles for robust biochemical reaction networks: what works, what cannot work, and what might almost work
+Normal rank
@@ Property / cites work @@
+Depth-First Search and Linear Graph Algorithms
@@ Property / cites work: Depth-First Search and Linear Graph Algorithms / rank @@
+Normal rank
@@ Property / cites work @@
+Network translation and steady-state properties of chemical reaction systems
+Normal rank