Computational Translation Framework Identifies Biochemical Reaction Networks with Special Topologies and Their Long-Term Dynamics
DOI10.1137/22m150469xzbMath1518.92065arXiv2212.01171OpenAlexW4379106460MaRDI QIDQ6103923
Unnamed Author, Jae Kyoung Kim, Jin-Su Kim, Bryan S. Hernandez
Publication date: 5 June 2023
Published in: SIAM Journal on Applied Mathematics (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/2212.01171
stationary distributionsteady stateirreducibilitycontinuous-time Markov chainstochastic reaction networksnetwork translationdeterministic reaction networks
Stationary stochastic processes (60G10) Nonlinear ordinary differential equations and systems (34A34) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42) Applications of continuous-time Markov processes on discrete state spaces (60J28)
Related Items (1)
Cites Work
- Translated chemical reaction networks
- Product-form stationary distributions for deficiency zero networks with non-mass action kinetics
- Design principles for robust biochemical reaction networks: what works, what cannot work, and what might almost work
- Product-form stationary distributions for deficiency zero chemical reaction networks
- Foundations of chemical reaction network theory
- Network translation and steady-state properties of chemical reaction systems
- Tier structure of strongly endotactic reaction networks
- Deficiency zero for random reaction networks under a stochastic block model framework
- A deficiency-based approach to parametrizing positive equilibria of biochemical reaction systems
- Computing weakly reversible deficiency zero network translations using elementary flux modes
- Dynamical properties of discrete reaction networks
- Product-Form Poisson-Like Distributions and Complex Balanced Reaction Systems
- Generalized Mass-Action Systems and Positive Solutions of Polynomial Equations with Real and Symbolic Exponents (Invited Talk)
- A Proof of the Global Attractor Conjecture in the Single Linkage Class Case
- Computational Identification of Irreducible State-Spaces for Stochastic Reaction Networks
- Markov Chains
- Existence of Positive Steady States for Weakly Reversible Mass-Action Systems
- Some Network Conditions for Positive Recurrence of Stochastically Modeled Reaction Networks
- Generalized Mass Action Systems: Complex Balancing Equilibria and Sign Vectors of the Stoichiometric and Kinetic-Order Subspaces
- Persistence and Permanence of Mass-Action and Power-Law Dynamical Systems
- Accuracy of Multiscale Reduction for Stochastic Reaction Systems
- Prevalence of deficiency-zero reaction networks in an Erdös–Rényi framework
- Stochastically modeled weakly reversible reaction networks with a single linkage class
- Stationary Distributions and Condensation in Autocatalytic Reaction Networks
- Stochastic Analysis of Biochemical Systems
- Depth-First Search and Linear Graph Algorithms
This page was built for publication: Computational Translation Framework Identifies Biochemical Reaction Networks with Special Topologies and Their Long-Term Dynamics
