Generalized mass-action systems and positive solutions of polynomial equations with real and symbolic exponents (invited talk)
From MaRDI portal
Publication:2879334
DOI10.1007/978-3-319-10515-4_22zbMATH Open1421.92043arXiv1406.6587OpenAlexW603179511MaRDI QIDQ2879334FDOQ2879334
Georg Regensburger, Stefan Müller
Publication date: 8 September 2014
Published in: Computer Algebra in Scientific Computing (Search for Journal in Brave)
Abstract: Dynamical systems arising from chemical reaction networks with mass action kinetics are the subject of chemical reaction network theory (CRNT). In particular, this theory provides statements about uniqueness, existence, and stability of positive steady states for all rate constants and initial conditions. In terms of the corresponding polynomial equations, the results guarantee uniqueness and existence of positive solutions for all positive parameters. We address a recent extension of CRNT, called generalized mass-action systems, where reaction rates are allowed to be power-laws in the concentrations. In particular, the (real) kinetic orders can differ from the (integer) stoichiometric coefficients. As with mass-action kinetics, complex balancing equilibria are determined by the graph Laplacian of the underlying network and can be characterized by binomial equations and parametrized by monomials. In algebraic terms, we focus on a constructive characterization of positive solutions of polynomial equations with real and symbolic exponents. Uniqueness and existence for all rate constants and initial conditions additionally depend on sign vectors of the stoichiometric and kinetic-order subspaces. This leads to a generalization of Birch's theorem, which is robust with respect to certain perturbations in the exponents. In this context, we discuss the occurrence of multiple complex balancing equilibria. We illustrate our results by a running example and provide a MAPLE worksheet with implementations of all algorithmic methods.
Full work available at URL: https://arxiv.org/abs/1406.6587
Recommendations
- Generalized mass action systems: complex balancing equilibria and sign vectors of the stoichiometric and kinetic-order subspaces
- A generalization of Birch's theorem and vertex-balanced steady states for generalized mass-action systems
- Realizations of kinetic differential equations
- Injectivity, multiple zeros and multistationarity in reaction networks
- A family of sparse polynomial systems arising in chemical reaction systems
positive solutionsoriented matroidschemical reaction network theorymultistationarityBirch's theorembinomial equationsgeneralized mass-action systemsgeneralized polynomial equationssymbolic exponents
Cited In (36)
- Comparative analysis of carbon cycle models via kinetic representations
- A decomposition-based approach for deriving positive steady states of a class of chemical reaction networks with non-mass-action kinetics
- Positive equilibria of Hill-type kinetic systems
- On the Bijectivity of Families of Exponential/Generalized Polynomial Maps
- Positive equilibria of power law kinetics on networks with independent linkage classes
- Reaction networks and kinetics of biochemical systems
- The center problem for the Lotka reactions with generalized mass-action kinetics
- Positive steady states of a class of power law systems with independent decompositions
- Linear conjugacy of chemical kinetic systems
- Planar S-systems: global stability and the center problem
- Node balanced steady states: unifying and generalizing complex and detailed balanced steady states
- Weakly reversible CF-decompositions of chemical kinetic systems
- On global stability of the Lotka reactions with generalized mass-action kinetics
- Common complexes of decompositions and complex balanced equilibria of chemical reaction networks
- A deficiency-based approach to parametrizing positive equilibria of biochemical reaction systems
- Realizations of quasi-polynomial systems and application for stability analysis
- Sufficient Conditions for Linear Stability of Complex-Balanced Equilibria in Generalized Mass-Action Systems
- A generalization of Birch's theorem and vertex-balanced steady states for generalized mass-action systems
- Complex-balanced equilibria of generalized mass-action systems: necessary conditions for linear stability
- Sign conditions for injectivity of generalized polynomial maps with applications to chemical reaction networks and real algebraic geometry
- Computational Translation Framework Identifies Biochemical Reaction Networks with Special Topologies and Their Long-Term Dynamics
- On a variant of Hilbert's 16th problem
- A SageMath package for elementary and sign vectors with applications to chemical reaction networks
- Network transformation-based analysis of biochemical systems
- Chemical reaction network approaches to biochemical systems theory
- Complex Balanced Equilibria of Weakly Reversible Poly-Pl Systems: Existence, Stability, and Robustness
- A network-based parametrization of positive steady states of power-law kinetic systems
- Analysis of mass-action systems by split network translation
- Computing weakly reversible deficiency zero network translations using elementary flux modes
- A family of sparse polynomial systems arising in chemical reaction systems
- A new decomposition of the graph Laplacian and the binomial structure of mass-action systems
- A computational approach to linear conjugacy in a class of power law kinetic systems
- Positive equilibria of a class of power-law kinetics
- Reactant subspaces and kinetics of chemical reaction networks
- Positive equilibria of weakly reversible power law kinetic systems with linear independent interactions
- Detailed balance \(=\) complex balance \(+\) cycle balance: a graph-theoretic proof for reaction networks and Markov chains
Uses Software
This page was built for publication: Generalized mass-action systems and positive solutions of polynomial equations with real and symbolic exponents (invited talk)
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2879334)
