Platypus (Q100283): Difference between revisions

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@@ Property / last update @@
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Calendar Gregorian
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@@ Property / cites work @@
-Platypus: an open-access software for integrating lymphocyte single-cell immune repertoires with transcriptomes
-Normal rank
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+We present 'Platypus', an open-source software platform providing a user-friendly interface to investigate B-cell receptor and T-cell receptor repertoires from scSeq experiments. 'Platypus' provides a framework to automate and ease the analysis of single-cell immune repertoires while also incorporating transcriptional information involving unsupervised clustering, gene expression and gene ontology. This R version of 'Platypus' is part of the 'ePlatypus' ecosystem for computational analysis of immunogenomics data: Yermanos et al. (2021) <doi:10.1093/nargab/lqab023>, Cotet et al. (2023) <doi:10.1093/bioinformatics/btad553>.
+Normal rank
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+Alexander Yermanos
@@ Property / author: Alexander Yermanos / rank @@
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+GNU General Public License, version 2.0
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@@ Property / imports: useful / rank @@
+Normal rank
@@ Property / cites work @@
+Platypus: an open-access software for integrating lymphocyte single-cell immune repertoires with transcriptomes
+Normal rank
@@ Property / cites work @@
+ePlatypus: an ecosystem for computational analysis of immunogenomics data
+Normal rank
@@ Property / depends on software @@
+R
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+Normal rank
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@@ links / mardi / name / links / mardi / name @@
+Software:100283

Latest revision as of 18:56, 12 March 2024

Single-Cell Immune Repertoire and Gene Expression Analysis

Language	Label	Description	Also known as
English	Platypus	Single-Cell Immune Repertoire and Gene Expression Analysis

Statements

instance of

R package

0 references

software version identifier

3.4.1

publication date

15 August 2022

0 references

3.2.3

publication date

19 October 2021

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3.3.2

publication date

28 January 2022

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3.3.5

publication date

11 April 2022

0 references

3.5.0

publication date

21 February 2024

0 references

0 references

0 references

21 February 2024

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description

We present 'Platypus', an open-source software platform providing a user-friendly interface to investigate B-cell receptor and T-cell receptor repertoires from scSeq experiments. 'Platypus' provides a framework to automate and ease the analysis of single-cell immune repertoires while also incorporating transcriptional information involving unsupervised clustering, gene expression and gene ontology. This R version of 'Platypus' is part of the 'ePlatypus' ecosystem for computational analysis of immunogenomics data: Yermanos et al. (2021) <doi:10.1093/nargab/lqab023>, Cotet et al. (2023) <doi:10.1093/bioinformatics/btad553>.

0 references

author

Alexander Yermanos

0 references

copyright license

GNU General Public License, version 2.0

0 references

imports

Biostrings

0 references

cowplot

0 references