GBJ (Q106167): Difference between revisions
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Property / last update: 13 January 2020 / rank | |||||||||||||||
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Property / cites work: Genetic Variant Set-Based Tests Using the Generalized Berk–Jones Statistic With Application to a Genome-Wide Association Study of Breast Cancer / rank | |||||||||||||||
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publication date: 30 August 2017
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publication date: 6 October 2017
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publication date: 27 June 2018
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publication date: 31 January 2024
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31 January 2024
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Offers the Generalized Berk-Jones (GBJ) test for set-based inference in geneticassociation studies. The GBJ is designed as an alternative to tests such as Berk-Jones (BJ), Higher Criticism (HC), Generalized Higher Criticism (GHC), Minimum p-value (minP), and Sequence Kernel Association Test (SKAT). All of these other methods (except for SKAT) are also implemented in this package, and we additionally provide an omnibus test (OMNI) which integrates information from each of the tests. The GBJ has been shown to outperform other tests in genetic association studies when signals are correlated and moderately sparse. Please see the vignette for a quickstart guide or Sun and Lin (2017) <arXiv:1710.02469> for more details. | |||||||||||||||
Property / description: Offers the Generalized Berk-Jones (GBJ) test for set-based inference in geneticassociation studies. The GBJ is designed as an alternative to tests such as Berk-Jones (BJ), Higher Criticism (HC), Generalized Higher Criticism (GHC), Minimum p-value (minP), and Sequence Kernel Association Test (SKAT). All of these other methods (except for SKAT) are also implemented in this package, and we additionally provide an omnibus test (OMNI) which integrates information from each of the tests. The GBJ has been shown to outperform other tests in genetic association studies when signals are correlated and moderately sparse. Please see the vignette for a quickstart guide or Sun and Lin (2017) <arXiv:1710.02469> for more details. / rank | |||||||||||||||
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Property / author: Ryan Sun / rank | |||||||||||||||
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Property / copyright license: GNU General Public License, version 3.0 / rank | |||||||||||||||
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software version identifier: ≥ 0.12.7 | |||||||||||||||
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Property / cites work: Set-Based Tests for Genetic Association Using the Generalized Berk-Jones Statistic / rank | |||||||||||||||
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software version identifier: ≥ 2.10 | |||||||||||||||
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Latest revision as of 19:56, 12 March 2024
Generalized Berk-Jones Test for Set-Based Inference in Genetic Association Studies
Language | Label | Description | Also known as |
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English | GBJ |
Generalized Berk-Jones Test for Set-Based Inference in Genetic Association Studies |
Statements
31 January 2024
0 references
Offers the Generalized Berk-Jones (GBJ) test for set-based inference in geneticassociation studies. The GBJ is designed as an alternative to tests such as Berk-Jones (BJ), Higher Criticism (HC), Generalized Higher Criticism (GHC), Minimum p-value (minP), and Sequence Kernel Association Test (SKAT). All of these other methods (except for SKAT) are also implemented in this package, and we additionally provide an omnibus test (OMNI) which integrates information from each of the tests. The GBJ has been shown to outperform other tests in genetic association studies when signals are correlated and moderately sparse. Please see the vignette for a quickstart guide or Sun and Lin (2017) <arXiv:1710.02469> for more details.
0 references