cellpypes (Q108147): Difference between revisions
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| Property / last update: 19 May 2022 / rank | |||||||||||||||
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| Property / cites work: cellpypes: Cell Type Pipes for R / rank | |||||||||||||||
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0.3.0 | |||||||||||||||
| Property / software version identifier: 0.3.0 / rank | |||||||||||||||
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| Property / software version identifier: 0.3.0 / qualifier | |||||||||||||||
publication date: 27 January 2024
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27 January 2024
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| Property / last update: 27 January 2024 / rank | |||||||||||||||
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Annotate single-cell RNA sequencing data manually based on marker gene thresholds. Find cell type rules (gene+threshold) through exploration, use the popular piping operator '%>%' to reconstruct complex cell type hierarchies. 'cellpypes' models technical noise to find positive and negative cells for a given expression threshold and returns cell type labels or pseudobulks. Cite this package as Frauhammer (2022) <doi:10.5281/zenodo.6555728> and visit <https://github.com/FelixTheStudent/cellpypes> for tutorials and newest features. | |||||||||||||||
| Property / description: Annotate single-cell RNA sequencing data manually based on marker gene thresholds. Find cell type rules (gene+threshold) through exploration, use the popular piping operator '%>%' to reconstruct complex cell type hierarchies. 'cellpypes' models technical noise to find positive and negative cells for a given expression threshold and returns cell type labels or pseudobulks. Cite this package as Frauhammer (2022) <doi:10.5281/zenodo.6555728> and visit <https://github.com/FelixTheStudent/cellpypes> for tutorials and newest features. / rank | |||||||||||||||
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| Property / author: Felix Frauhammer / rank | |||||||||||||||
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| Property / copyright license: GNU General Public License / rank | |||||||||||||||
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| Property / copyright license: GNU General Public License / qualifier | |||||||||||||||
edition/version: ≥ 3 (English) | |||||||||||||||
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| Property / imports: scUtils / rank | |||||||||||||||
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| Property / cites work: cellpypes: Cell Type Pipes for R / rank | |||||||||||||||
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| Property / depends on software: R / rank | |||||||||||||||
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| Property / depends on software: R / qualifier | |||||||||||||||
software version identifier: ≥ 2.10 | |||||||||||||||
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| Property / MaRDI profile type: MaRDI software profile / rank | |||||||||||||||
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| links / mardi / name | links / mardi / name | ||||||||||||||
Latest revision as of 18:56, 12 March 2024
Cell Type Pipes for Single-Cell RNA Sequencing Data
| Language | Label | Description | Also known as |
|---|---|---|---|
| English | cellpypes |
Cell Type Pipes for Single-Cell RNA Sequencing Data |
Statements
27 January 2024
0 references
Annotate single-cell RNA sequencing data manually based on marker gene thresholds. Find cell type rules (gene+threshold) through exploration, use the popular piping operator '%>%' to reconstruct complex cell type hierarchies. 'cellpypes' models technical noise to find positive and negative cells for a given expression threshold and returns cell type labels or pseudobulks. Cite this package as Frauhammer (2022) <doi:10.5281/zenodo.6555728> and visit <https://github.com/FelixTheStudent/cellpypes> for tutorials and newest features.
0 references
