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Property / last update
11 October 2021
Timestamp+2021-10-11T00:00:00Z
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Property / author: Simon Benhamou / rank
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Property / copyright license: GNU General Public License, version 3.0 / rank
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Property / cites work
 
Property / cites work: Detection of multiple changes in a sequence of dependent variables / rank
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Property / cites work: Using penalized contrasts for the change-point problem / rank
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Property / cites work: A Segmentation/Clustering Model for the Analysis of Array CGH Data / rank
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Property / cites work: Identifying stationary phases in multivariate time-series for highlighting behavioural modes and home range settlements / rank
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Property / depends on software
 
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Property / software version identifier
 
0.1.0
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publication date: 23 February 2018
Timestamp+2018-02-23T00:00:00Z
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0.2.0
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publication date: 27 February 2019
Timestamp+2019-02-27T00:00:00Z
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0.3.1
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publication date: 21 August 2023
Timestamp+2023-08-21T00:00:00Z
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21 August 2023
Timestamp+2023-08-21T00:00:00Z
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Property / description
 
Provides two methods for segmentation and joint segmentation/clustering of bivariate time-series. Originally intended for ecological segmentation (home-range and behavioural modes) but easily applied on other series, the package also provides tools for analysing outputs from R packages 'moveHMM' and 'marcher'. The segmentation method is a bivariate extension of Lavielle's method available in 'adehabitatLT' (Lavielle, 1999 <doi:10.1016/S0304-4149(99)00023-X> and 2005 <doi:10.1016/j.sigpro.2005.01.012>). This method rely on dynamic programming for efficient segmentation. The segmentation/clustering method alternates steps of dynamic programming with an Expectation-Maximization algorithm. This is an extension of Picard et al (2007) <doi:10.1111/j.1541-0420.2006.00729.x> method (formerly available in 'cghseg' package) to the bivariate case. The method is fully described in Patin et al (2018) <doi:10.1101/444794>.
Property / description: Provides two methods for segmentation and joint segmentation/clustering of bivariate time-series. Originally intended for ecological segmentation (home-range and behavioural modes) but easily applied on other series, the package also provides tools for analysing outputs from R packages 'moveHMM' and 'marcher'. The segmentation method is a bivariate extension of Lavielle's method available in 'adehabitatLT' (Lavielle, 1999 <doi:10.1016/S0304-4149(99)00023-X> and 2005 <doi:10.1016/j.sigpro.2005.01.012>). This method rely on dynamic programming for efficient segmentation. The segmentation/clustering method alternates steps of dynamic programming with an Expectation-Maximization algorithm. This is an extension of Picard et al (2007) <doi:10.1111/j.1541-0420.2006.00729.x> method (formerly available in 'cghseg' package) to the bivariate case. The method is fully described in Patin et al (2018) <doi:10.1101/444794>. / rank
 
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Property / author
 
Property / author: Remi Patin / rank
 
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Property / author: Marie-Pierre Etienne / rank
 
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Property / author: Emilie Lebarbier / rank
 
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Property / author: Simon Benhamou / rank
 
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Property / copyright license: GNU General Public License, version 3.0 / rank
 
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Property / imports: ggplot2 / rank
 
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Property / cites work
 
Property / cites work: Detection of multiple changes in a sequence of dependent variables / rank
 
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Property / cites work
 
Property / cites work: Using penalized contrasts for the change-point problem / rank
 
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Property / cites work
 
Property / cites work: A Segmentation/Clustering Model for the Analysis of Array CGH Data / rank
 
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Property / cites work
 
Property / cites work: Identifying stationary phases in multivariate time-series for highlighting behavioural modes and home range settlements / rank
 
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Property / MaRDI profile type
 
Property / MaRDI profile type: MaRDI software profile / rank
 
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links / mardi / namelinks / mardi / name
 

Latest revision as of 18:56, 12 March 2024

Bivariate Segmentation/Clustering Methods and Tools
Language Label Description Also known as
English
segclust2d
Bivariate Segmentation/Clustering Methods and Tools

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    0.3.0
    11 October 2021
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    0.1.0
    23 February 2018
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    0.2.0
    27 February 2019
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    0.3.1
    21 August 2023
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    21 August 2023
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    Provides two methods for segmentation and joint segmentation/clustering of bivariate time-series. Originally intended for ecological segmentation (home-range and behavioural modes) but easily applied on other series, the package also provides tools for analysing outputs from R packages 'moveHMM' and 'marcher'. The segmentation method is a bivariate extension of Lavielle's method available in 'adehabitatLT' (Lavielle, 1999 <doi:10.1016/S0304-4149(99)00023-X> and 2005 <doi:10.1016/j.sigpro.2005.01.012>). This method rely on dynamic programming for efficient segmentation. The segmentation/clustering method alternates steps of dynamic programming with an Expectation-Maximization algorithm. This is an extension of Picard et al (2007) <doi:10.1111/j.1541-0420.2006.00729.x> method (formerly available in 'cghseg' package) to the bivariate case. The method is fully described in Patin et al (2018) <doi:10.1101/444794>.
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