GCalignR (Q30647): Difference between revisions

@@ description / en / description / en @@
+Simple Peak Alignment for Gas-Chromatography Data
@@ Property / instance of @@
+R package
@@ Property / instance of: R package / rank @@
+Normal rank
@@ Property / software version identifier @@
+.0.5
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+publication date: 26 January 2023Timestamp +2023-01-26T00:00:00Z
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+publication date: 6 February 2017Timestamp +2017-02-06T00:00:00Z
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+publication date: 15 September 2017Timestamp +2017-09-15T00:00:00Z
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+publication date: 16 January 2018Timestamp +2018-01-16T00:00:00Z
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+publication date: 16 July 2018Timestamp +2018-07-16T00:00:00Z
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+publication date: 26 August 2020Timestamp +2020-08-26T00:00:00Z
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@@ Property / maintained by @@
+Meinolf Ottensmann
@@ Property / maintained by: Meinolf Ottensmann / rank @@
+Normal rank
@@ Property / CRAN project @@
+GCalignR
@@ Property / CRAN project: GCalignR / rank @@
+Normal rank
@@ Property / programmed in @@
+R
@@ Property / programmed in: R / rank @@
+Normal rank
@@ Property / last update @@
+January 2024Timestamp +2024-01-22T00:00:00Z
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@@ Property / last update: 22 January 2024 / rank @@
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@@ Property / description @@
+Aligns peak based on peak retention times and matches homologous peaks    across samples. The underlying alignment procedure comprises three sequential steps.    (1) Full alignment of samples by linear transformation of retention times to     maximise similarity among homologous peaks (2) Partial alignment of peaks within     a user-defined retention time window to cluster homologous peaks (3) Merging rows    that are likely representing homologous substances (i.e. no sample shows peaks in     both rows and the rows have similar retention time means). The algorithm is described in detail    in Ottensmann et al., 2018 <doi:10.1371/journal.pone.0198311>.
+Normal rank
@@ Property / author @@
+Meinolf Ottensmann
@@ Property / author: Meinolf Ottensmann / rank @@
+Normal rank
@@ Property / author @@
+Martin Stoffel
@@ Property / author: Martin Stoffel / rank @@
+Normal rank
@@ Property / author @@
+Hazel J. Nichols
@@ Property / author: Hazel J. Nichols / rank @@
+Normal rank
@@ Property / author @@
+Joseph I. Hoffman
@@ Property / author: Joseph I. Hoffman / rank @@
+Normal rank
@@ Property / copyright license @@
+GNU General Public License, version 2.0
@@ Property / copyright license: GNU General Public License, version 2.0 / rank @@
+Normal rank
@@ Property / copyright license @@
+GNU General Public License, version 3.0
@@ Property / copyright license: GNU General Public License, version 3.0 / rank @@
+Normal rank
@@ Property / copyright license @@
+File License
@@ Property / copyright license: File License / rank @@
+Normal rank
@@ Property / copyright license: File License / qualifier @@
+URL: https://cran.r-project.org/web/packages/GCalignR/LICENSE
@@ Property / imports @@
+ggplot2
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@@ Property / imports: ggplot2 / qualifier @@
+software version identifier: ≥ 2.2.1
@@ Property / imports @@
+graphics
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+stats
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+readr
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+reshape2
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+stringr
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+utils
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+pbapply
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+tibble
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@@ Property / cites work @@
+GCalignR: An R package for aligning gas-chromatography data for ecological and evolutionary studies
+Normal rank
@@ Property / MaRDI profile type @@
+MaRDI software profile
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@@ Property / depends on software @@
+R
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+software version identifier: ≥ 3.2.5
@@ Property / source code repository @@
+https://github.com/cran/GCalignR
@@ Property / source code repository: https://github.com/cran/GCalignR / rank @@
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@@ Property / Software Heritage ID @@
+swh:1:snp:4b2da2b923a9e0941e6e82405faed3b4e0270baa
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+source code repository: https://github.com/cran/GCalignR
+point in time: 27 January 2024Timestamp +2024-01-27T00:00:00Z
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@@ links / mardi / name / links / mardi / name @@
+Software:30647

Latest revision as of 19:28, 21 March 2024

Simple Peak Alignment for Gas-Chromatography Data

Language	Label	Description	Also known as
English	GCalignR	Simple Peak Alignment for Gas-Chromatography Data

Statements

instance of

R package

0 references

software version identifier

1.0.5

publication date

26 January 2023

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0.1.0

publication date

6 February 2017

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1.0.0

publication date

15 September 2017

0 references

1.0.1

publication date

16 January 2018

0 references

1.0.2

publication date

16 July 2018

0 references

1.0.3

publication date

26 August 2020

0 references

1.0.6

publication date

22 January 2024

0 references

0 references

0 references

22 January 2024

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description

Aligns peak based on peak retention times and matches homologous peaks across samples. The underlying alignment procedure comprises three sequential steps. (1) Full alignment of samples by linear transformation of retention times to maximise similarity among homologous peaks (2) Partial alignment of peaks within a user-defined retention time window to cluster homologous peaks (3) Merging rows that are likely representing homologous substances (i.e. no sample shows peaks in both rows and the rows have similar retention time means). The algorithm is described in detail in Ottensmann et al., 2018 <doi:10.1371/journal.pone.0198311>.

0 references

0 references

0 references

0 references

0 references

GNU General Public License, version 2.0