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Property / programmed in
 
Property / programmed in: R / rank
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Property / last update
23 February 2023
Timestamp+2023-02-23T00:00:00Z
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Property / last update: 23 February 2023 / rank
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Property / author
 
Property / author: Chi Liu / rank
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Property / copyright license
 
Property / copyright license: GNU General Public License, version 3.0 / rank
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Property / depends on software
 
Property / depends on software: R / rank
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Property / depends on software: R / qualifier
 
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Property / imports: ggplot2 / rank
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Property / imports: microeco / rank
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Property / imports: microeco / qualifier
 
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Property / imports: magrittr / rank
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Property / imports
 
Property / imports: ggpubr / rank
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Property / Software Heritage ID
 
Property / Software Heritage ID: swh:1:snp:469258d271528f38c2eff9859481ec2491816b3b / rank
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Property / Software Heritage ID: swh:1:snp:469258d271528f38c2eff9859481ec2491816b3b / qualifier
 
Property / Software Heritage ID: swh:1:snp:469258d271528f38c2eff9859481ec2491816b3b / qualifier
point in time: +2023-10-15T01:52:57Z
Timestamp+2023-10-15T01:52:57Z
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0.2.0
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publication date: 1 June 2023
Timestamp+2023-06-01T00:00:00Z
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Precision1 day
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0.3.0
Property / software version identifier: 0.3.0 / rank
 
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publication date: 10 September 2023
Timestamp+2023-09-10T00:00:00Z
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Property / programmed in: R / rank
 
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10 September 2023
Timestamp+2023-09-10T00:00:00Z
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Property / last update: 10 September 2023 / rank
 
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Property / description
 
Two pipelines are provided to study microbial turnover along a gradient, including the beta diversity and microbial abundance change. The 'betaturn' class consists of the steps of community dissimilarity matrix generation, matrix conversion, differential test and visualization. The workflow of 'taxaturn' class includes the taxonomic abundance calculation, abundance transformation, abundance change summary, statistical analysis and visualization. Multiple statistical approaches can contribute to the analysis of microbial turnover.
Property / description: Two pipelines are provided to study microbial turnover along a gradient, including the beta diversity and microbial abundance change. The 'betaturn' class consists of the steps of community dissimilarity matrix generation, matrix conversion, differential test and visualization. The workflow of 'taxaturn' class includes the taxonomic abundance calculation, abundance transformation, abundance change summary, statistical analysis and visualization. Multiple statistical approaches can contribute to the analysis of microbial turnover. / rank
 
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Property / author
 
Property / author: Chi Liu / rank
 
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Property / copyright license
 
Property / copyright license: GNU General Public License, version 3.0 / rank
 
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Property / imports
 
Property / imports: R6 / rank
 
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Property / imports: ggplot2 / rank
 
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Property / imports: microeco / rank
 
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Property / imports: GUniFrac / rank
 
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Property / imports: magrittr / rank
 
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Property / imports: ggpubr / rank
 
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Property / imports: lmerTest / rank
 
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Property / imports: betareg / rank
 
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Property / imports: glmmTMB / rank
 
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Property / depends on software
 
Property / depends on software: R / rank
 
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Property / depends on software: R / qualifier
 
Property / MaRDI profile type
 
Property / MaRDI profile type: MaRDI software profile / rank
 
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links / mardi / namelinks / mardi / name
 

Latest revision as of 19:56, 12 March 2024

Decipher Microbial Turnover along a Gradient
Language Label Description Also known as
English
mecoturn
Decipher Microbial Turnover along a Gradient

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    0.1.0
    23 February 2023
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    0.2.0
    1 June 2023
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    0.3.0
    10 September 2023
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    10 September 2023
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    Two pipelines are provided to study microbial turnover along a gradient, including the beta diversity and microbial abundance change. The 'betaturn' class consists of the steps of community dissimilarity matrix generation, matrix conversion, differential test and visualization. The workflow of 'taxaturn' class includes the taxonomic abundance calculation, abundance transformation, abundance change summary, statistical analysis and visualization. Multiple statistical approaches can contribute to the analysis of microbial turnover.
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