ibdsim2 (Q106122): Difference between revisions

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@@ Property / programmed in @@
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+Simulation of segments shared identical-by-descent (IBD) by    pedigree members. Using sex specific recombination rates along the    human genome (Halldorsson et al. (2019)    <doi:10.1126/science.aau1043>), phased chromosomes are simulated for    all pedigree members. Applications include calculation of realised    relatedness coefficients and IBD segment distributions. 'ibdsim2' is    part of the 'ped suite' collection of packages for pedigree analysis.    A detailed presentation of the 'ped suite', including a separate    chapter on 'ibdsim2', is available in the book 'Pedigree analysis in    R' (Vigeland, 2021, ISBN:9780128244302). A 'shiny' app for visualising    and comparing IBD distributions is available at    <https://magnusdv.shinyapps.io/ibdsim2-shiny/>.
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+Magnus Dehli Vigeland
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Latest revision as of 18:56, 12 March 2024

Simulation of Chromosomal Regions Shared by Family Members

Language	Label	Description	Also known as
English	ibdsim2	Simulation of Chromosomal Regions Shared by Family Members

Statements

instance of

R package

0 references

software version identifier

1.5.0

publication date

7 June 2022

0 references

1.1

publication date

28 June 2020

0 references

1.2

publication date

12 July 2020

0 references

1.3.0

publication date

13 November 2020

0 references

1.4.0

publication date

24 July 2021

0 references

2.0.0

publication date

17 August 2023

0 references

programmed in

R

0 references

last update

17 August 2023

0 references

maintained by

Magnus Dehli Vigeland

0 references

description

Simulation of segments shared identical-by-descent (IBD) by pedigree members. Using sex specific recombination rates along the human genome (Halldorsson et al. (2019) <doi:10.1126/science.aau1043>), phased chromosomes are simulated for all pedigree members. Applications include calculation of realised relatedness coefficients and IBD segment distributions. 'ibdsim2' is part of the 'ped suite' collection of packages for pedigree analysis. A detailed presentation of the 'ped suite', including a separate chapter on 'ibdsim2', is available in the book 'Pedigree analysis in R' (Vigeland, 2021, ISBN:9780128244302). A 'shiny' app for visualising and comparing IBD distributions is available at <https://magnusdv.shinyapps.io/ibdsim2-shiny/>.

0 references

author

Magnus Dehli Vigeland

0 references

copyright license

GNU General Public License, version 3.0

0 references

depends on software

R

software version identifier

≥ 4.1.0

0 references