Learning black- and gray-box chemotactic PDEs/closures from agent based Monte Carlo simulation data (Q6110192): Difference between revisions

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scientific article; zbMATH DE number 7707378

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English	Learning black- and gray-box chemotactic PDEs/closures from agent based Monte Carlo simulation data	scientific article; zbMATH DE number 7707378

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instance of

scholarly article

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title

Learning black- and gray-box chemotactic PDEs/closures from agent based Monte Carlo simulation data (English)

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author

Seung Joon Lee

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Q6086910

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Constantinos I. Siettos

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Ioannis G. Kevrekidis

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published in

Journal of Mathematical Biology

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publication date

4 July 2023

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full work available at URL

https://arxiv.org/abs/2205.13545

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zbMATH Keywords

inverse problems

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partial differential equations

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machine learning

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stochastic simulations

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chemotaxis

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numerical analysis

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multiscale methods

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MaRDI profile type

MaRDI publication profile

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cites work

MULTISCALE BIOLOGICAL TISSUE MODELS AND FLUX-LIMITED CHEMOTAXIS FOR MULTICELLULAR GROWING SYSTEMS

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Chemotaxis and cross-diffusion models in complex environments: Models and analytic problems toward a multiscale vision

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Q4365239

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Discovering governing equations from data by sparse identification of nonlinear dynamical systems

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Nonlinear mean field Fokker-Planck equations. Application to the chemotaxis of biological populations

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Solving and learning nonlinear PDEs with Gaussian processes

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Deep neural network modeling of unknown partial differential equations in nodal space

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A family of embedded Runge-Kutta formulae

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Parsimonious representation of nonlinear dynamical systems through manifold learning: a chemotaxis case study

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Turbulence Modeling in the Age of Data

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From Individual to Collective Behavior in Bacterial Chemotaxis

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Taxis equations for amoeboid cells

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An equation-free computational approach for extracting population-level behavior from individual-based models of biological dispersal

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Hybrid Modelling of Individual Movement and Collective Behaviour

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Numerical bifurcation analysis of PDEs from lattice Boltzmann model simulations: a parsimonious machine learning approach

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Model Reduction and Coarse-Graining Approaches for Multiscale Phenomena

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Integration of neural networks with numerical solution of PDEs for closure models development

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Model for chemotaxis

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The Patlak–Keller–Segel Model and Its Variations: Properties of Solutions via Maximum Principle

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Dynamic systems identification with Gaussian processes

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Data-driven blended equations of state for condensed-phase explosives

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Deciding the Nature of the Coarse Equation through Microscopic Simulations: The Baby-Bathwater Scheme

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Q4849796

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Analyticity of the solutions of implicit function problems with analytic data

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Mathematical models for chemotaxis and their applications in self-organisation phenomena

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Data-Driven Discovery of Closure Models

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A paradigm for data-driven predictive modeling using field inversion and machine learning

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Nonlinear information fusion algorithms for data-efficient multi-fidelity modelling

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Data driven governing equations approximation using deep neural networks

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Hidden physics models: machine learning of nonlinear partial differential equations

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Machine learning of linear differential equations using Gaussian processes

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Physics-informed neural networks: a deep learning framework for solving forward and inverse problems involving nonlinear partial differential equations

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Q3394879

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SIMULATING INDIVIDUAL-BASED MODELS OF BACTERIAL CHEMOTAXIS WITH ASYMPTOTIC VARIANCE REDUCTION

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Bayesian model selection using automatic relevance determination for nonlinear dynamical systems

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Application of Coarse Integration to Bacterial Chemotaxis

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Coarse-grained computational stability analysis and acceleration of the collective dynamics of a Monte Carlo simulation of bacterial locomotion

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Semiglobal stabilization of nonlinear systems using fuzzy control and singular perturbation methods

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Truncated Chebyshev series approximation of fuzzy systems for control and nonlinear system identification

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Q3658782

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Overview of mathematical approaches used to model bacterial chemotaxis. I: The single cell

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Overview of mathematical approaches used to model bacterial chemotaxis. II: Bacterial popu\-lations

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Data-driven forecasting of high-dimensional chaotic systems with long short-term memory networks

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Reduced-space Gaussian process regression for data-driven probabilistic forecast of chaotic dynamical systems

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Numerical aspects for approximating governing equations using data

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Data-driven deep learning of partial differential equations in modal space

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Macroscopic equations for bacterial chemotaxis: integration of detailed biochemistry of cell signaling

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B-PINNs: Bayesian physics-informed neural networks for forward and inverse PDE problems with noisy data

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Monte Carlo simulation for kinetic chemotaxis model: an application to the traveling population wave

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Identifiers

zbMATH Open document ID

1521.92007

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arXiv ID

2205.13545

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Mathematics Subject Classification ID

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10.1007/S00285-023-01946-0

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Sitelinks

Mathematics(1 entry)

mardi Publication:6110192

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