Analysis of similarity/dissimilarity of DNA sequences based on chaos game representation (Q370321): Difference between revisions
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| Property / author: Wei Deng / rank | |||
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Summary: The Chaos Game is an algorithm that can allow one to produce pictures of fractal structures. Considering that the four bases A, G, C, and T of DNA sequences can be divided into three classes according to their chemical structure, we propose different kinds of CGR-walk sequences. Based on CGR coordinates of random sequences, we introduce some invariants for the DNA primary sequences. As an application, we can make the examination of similarity/dissimilarity among the first exon of \(\beta \)-globin gene of different species. The results indicate that our method is efficient and can get more biological information. | |||
| Property / review text: Summary: The Chaos Game is an algorithm that can allow one to produce pictures of fractal structures. Considering that the four bases A, G, C, and T of DNA sequences can be divided into three classes according to their chemical structure, we propose different kinds of CGR-walk sequences. Based on CGR coordinates of random sequences, we introduce some invariants for the DNA primary sequences. As an application, we can make the examination of similarity/dissimilarity among the first exon of \(\beta \)-globin gene of different species. The results indicate that our method is efficient and can get more biological information. / rank | |||
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| Property / Mathematics Subject Classification ID | |||
| Property / Mathematics Subject Classification ID: 92D25 / rank | |||
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| Property / Mathematics Subject Classification ID: 37N25 / rank | |||
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| Property / Mathematics Subject Classification ID: 62P10 / rank | |||
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| Property / zbMATH DE Number: 6209500 / rank | |||
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Revision as of 12:39, 28 June 2023
scientific article
| Language | Label | Description | Also known as |
|---|---|---|---|
| English | Analysis of similarity/dissimilarity of DNA sequences based on chaos game representation |
scientific article |
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Analysis of similarity/dissimilarity of DNA sequences based on chaos game representation (English)
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19 September 2013
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Summary: The Chaos Game is an algorithm that can allow one to produce pictures of fractal structures. Considering that the four bases A, G, C, and T of DNA sequences can be divided into three classes according to their chemical structure, we propose different kinds of CGR-walk sequences. Based on CGR coordinates of random sequences, we introduce some invariants for the DNA primary sequences. As an application, we can make the examination of similarity/dissimilarity among the first exon of \(\beta \)-globin gene of different species. The results indicate that our method is efficient and can get more biological information.
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