Backward nested descriptors asymptotics with inference on stem cell differentiation (Q1800791): Difference between revisions

Classical principal component analysis (PCA) is a dimension reduction tool widely used in fields such as genetics, environmental studies and demographics. This paper proposes some generalization of classical PCA's asymptotics. The authors consider the novel statistical problem of deriving asymptotic results for nested random sequences of statistical descriptors for data in a non-Euclidean space. The authors' abstract: For sequences of random backward nested subspaces as occur, say, in dimension reduction for manifold or stratified space valued data, asymptotic results are derived. In fact, we formulate our results more generally for backward nested families of descriptors (BNFD). Under rather general conditions, asymptotic strong consistency holds. Under additional, still rather general hypotheses, among them existence of a.s. local twice differentiable charts, asymptotic joint normality of a BNFD can be shown. If charts factor suitably, this leads to individual asymptotic normality for the last element, a principal nested mean or a principal nested geodesic, say. It turns out that these results pertain to principal nested spheres (PNS) and principal nested great subsphere (PNGS) analysis by \textit{S. Jung} et al. [Biometrika 99, No. 3, 551--568 (2012; Zbl 1437.62507)] as well as to the intrinsic mean on a first geodesic principal component (IMo1GPC) for manifolds and Kendall's shape spaces. A nested bootstrap two-sample test is derived and illustrated with simulations. In a study on real data, PNGS is applied to track early human mesenchymal stem cell differentiation over a coarse time grid and, among others, to locate a change point with direct consequences for the design of further studies.