Finite state projection for approximating the stationary solution to the chemical master equation using reaction rate equations (Q2328496): Difference between revisions

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English	Finite state projection for approximating the stationary solution to the chemical master equation using reaction rate equations	scientific article

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scholarly article

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title

Finite state projection for approximating the stationary solution to the chemical master equation using reaction rate equations (English)

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Mathematical Biosciences

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publication date

10 October 2019

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zbMATH Keywords

chemical master equation

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stationary solution

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limiting behavior

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adaptive finite state projection

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detailed balance

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stochastic simulation

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MaRDI profile type

Publication

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full work available at URL

https://doi.org/10.1016/j.mbs.2019.108243

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cites work

Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems

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Accurate Chemical Master Equation Solution Using Multi-Finite Buffers

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Adaptive Discrete Galerkin Methods Applied to the Chemical Master Equation

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Simultaneous state-time approximation of the chemical master equation using tensor product formats

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Q2758041

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A literature survey of low-rank tensor approximation techniques

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On the numerical solution of the chemical master equation with sums of rank one tensors

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Modeling and Simulating Chemical Reactions

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On Reduced Models for the Chemical Master Equation

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Solving chemical master equations by adaptive wavelet compression

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Tensor Approximation of Stationary Distributions of Chemical Reaction Networks

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Tensor Decompositions and Applications

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Complex dynamics of Holling type II Lotka--Volterra predator--prey system with impulsive perturbations on the predator.

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Multiscale Modeling of Chemical Kinetics via the Master Equation

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A multiple time interval finite state projection algorithm for the solution to the chemical master equation

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Tensor-Train Decomposition

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Breaking the Curse of Dimensionality, Or How to Use SVD in Many Dimensions

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Approximation and inference methods for stochastic biochemical kinetics—a tutorial review

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Solving the chemical master equation by a fast adaptive finite state projection based on the stochastic simulation algorithm

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Inexact uniformization and GMRES methods for large Markov chains

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Fokker–Planck approximation of the master equation in molecular biology

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Identifiers

zbMATH Open document ID

1425.92099

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DOI

10.1016/j.mbs.2019.108243

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Mathematics Subject Classification ID

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Sitelinks

Mathematics(1 entry)

mardi Publication:2328496

@@ Property / cites work @@
+Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
+Normal rank
@@ Property / cites work @@
+Accurate Chemical Master Equation Solution Using Multi-Finite Buffers
+Normal rank
@@ Property / cites work @@
+Adaptive Discrete Galerkin Methods Applied to the Chemical Master Equation
+Normal rank
@@ Property / cites work @@
+Simultaneous state-time approximation of the chemical master equation using tensor product formats
+Normal rank
@@ Property / cites work @@
+Q2758041
@@ Property / cites work: Q2758041 / rank @@
+Normal rank
@@ Property / cites work @@
+A literature survey of low-rank tensor approximation techniques
+Normal rank
@@ Property / cites work @@
+On the numerical solution of the chemical master equation with sums of rank one tensors
+Normal rank
@@ Property / cites work @@
+Modeling and Simulating Chemical Reactions
@@ Property / cites work: Modeling and Simulating Chemical Reactions / rank @@
+Normal rank
@@ Property / cites work @@
+On Reduced Models for the Chemical Master Equation
+Normal rank
@@ Property / cites work @@
+Solving chemical master equations by adaptive wavelet compression
+Normal rank
@@ Property / cites work @@
+Tensor Approximation of Stationary Distributions of Chemical Reaction Networks
+Normal rank
@@ Property / cites work @@
+Tensor Decompositions and Applications
@@ Property / cites work: Tensor Decompositions and Applications / rank @@
+Normal rank
@@ Property / cites work @@
+Complex dynamics of Holling type II Lotka--Volterra predator--prey system with impulsive perturbations on the predator.
+Normal rank
@@ Property / cites work @@
+Multiscale Modeling of Chemical Kinetics via the Master Equation
+Normal rank
@@ Property / cites work @@
+A multiple time interval finite state projection algorithm for the solution to the chemical master equation
+Normal rank
@@ Property / cites work @@
+Tensor-Train Decomposition
@@ Property / cites work: Tensor-Train Decomposition / rank @@
+Normal rank
@@ Property / cites work @@
+Breaking the Curse of Dimensionality, Or How to Use SVD in Many Dimensions
+Normal rank
@@ Property / cites work @@
+Approximation and inference methods for stochastic biochemical kinetics—a tutorial review
+Normal rank
@@ Property / cites work @@
+Solving the chemical master equation by a fast adaptive finite state projection based on the stochastic simulation algorithm
+Normal rank
@@ Property / cites work @@
+Inexact uniformization and GMRES methods for large Markov chains
+Normal rank
@@ Property / cites work @@
+Fokker–Planck approximation of the master equation in molecular biology
+Normal rank