Learning black- and gray-box chemotactic PDEs/closures from agent based Monte Carlo simulation data (Q6110192): Difference between revisions

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scientific article; zbMATH DE number 7707378

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English	Learning black- and gray-box chemotactic PDEs/closures from agent based Monte Carlo simulation data	scientific article; zbMATH DE number 7707378

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instance of

scholarly article

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title

Learning black- and gray-box chemotactic PDEs/closures from agent based Monte Carlo simulation data (English)

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author

Seung Joon Lee

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Q6086910

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Constantinos I. Siettos

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Ioannis G. Kevrekidis

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published in

Journal of Mathematical Biology

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publication date

4 July 2023

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full work available at URL

https://arxiv.org/abs/2205.13545

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zbMATH Keywords

inverse problems

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partial differential equations

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machine learning

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stochastic simulations

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chemotaxis

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numerical analysis

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multiscale methods

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MaRDI profile type

MaRDI publication profile

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cites work

MULTISCALE BIOLOGICAL TISSUE MODELS AND FLUX-LIMITED CHEMOTAXIS FOR MULTICELLULAR GROWING SYSTEMS

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Chemotaxis and cross-diffusion models in complex environments: Models and analytic problems toward a multiscale vision

0 references

Q4365239

0 references

Discovering governing equations from data by sparse identification of nonlinear dynamical systems

0 references

Nonlinear mean field Fokker-Planck equations. Application to the chemotaxis of biological populations

0 references

Solving and learning nonlinear PDEs with Gaussian processes

0 references

Deep neural network modeling of unknown partial differential equations in nodal space

0 references

A family of embedded Runge-Kutta formulae

0 references

Parsimonious representation of nonlinear dynamical systems through manifold learning: a chemotaxis case study

0 references

Turbulence Modeling in the Age of Data

0 references

From Individual to Collective Behavior in Bacterial Chemotaxis

0 references

Taxis equations for amoeboid cells

0 references

An equation-free computational approach for extracting population-level behavior from individual-based models of biological dispersal

0 references

Hybrid Modelling of Individual Movement and Collective Behaviour

0 references

Numerical bifurcation analysis of PDEs from lattice Boltzmann model simulations: a parsimonious machine learning approach

0 references

Model Reduction and Coarse-Graining Approaches for Multiscale Phenomena

0 references

Integration of neural networks with numerical solution of PDEs for closure models development

0 references

Model for chemotaxis

0 references

The Patlak–Keller–Segel Model and Its Variations: Properties of Solutions via Maximum Principle

0 references

Dynamic systems identification with Gaussian processes

0 references

Data-driven blended equations of state for condensed-phase explosives

0 references

Deciding the Nature of the Coarse Equation through Microscopic Simulations: The Baby-Bathwater Scheme

0 references

Q4849796

0 references

Analyticity of the solutions of implicit function problems with analytic data

0 references

Mathematical models for chemotaxis and their applications in self-organisation phenomena

0 references

Data-Driven Discovery of Closure Models

0 references

A paradigm for data-driven predictive modeling using field inversion and machine learning

0 references

Nonlinear information fusion algorithms for data-efficient multi-fidelity modelling

0 references

Data driven governing equations approximation using deep neural networks

0 references

Hidden physics models: machine learning of nonlinear partial differential equations

0 references

Machine learning of linear differential equations using Gaussian processes

0 references

Physics-informed neural networks: a deep learning framework for solving forward and inverse problems involving nonlinear partial differential equations

0 references

Q3394879

0 references

SIMULATING INDIVIDUAL-BASED MODELS OF BACTERIAL CHEMOTAXIS WITH ASYMPTOTIC VARIANCE REDUCTION

0 references

Bayesian model selection using automatic relevance determination for nonlinear dynamical systems

0 references

Application of Coarse Integration to Bacterial Chemotaxis

0 references

Coarse-grained computational stability analysis and acceleration of the collective dynamics of a Monte Carlo simulation of bacterial locomotion

0 references

Semiglobal stabilization of nonlinear systems using fuzzy control and singular perturbation methods

0 references

Truncated Chebyshev series approximation of fuzzy systems for control and nonlinear system identification

0 references

Q3658782

0 references

Overview of mathematical approaches used to model bacterial chemotaxis. I: The single cell

0 references

Overview of mathematical approaches used to model bacterial chemotaxis. II: Bacterial popu\-lations

0 references

Data-driven forecasting of high-dimensional chaotic systems with long short-term memory networks

0 references

Reduced-space Gaussian process regression for data-driven probabilistic forecast of chaotic dynamical systems

0 references

Numerical aspects for approximating governing equations using data

0 references

Data-driven deep learning of partial differential equations in modal space

0 references

Macroscopic equations for bacterial chemotaxis: integration of detailed biochemistry of cell signaling

0 references

B-PINNs: Bayesian physics-informed neural networks for forward and inverse PDE problems with noisy data

0 references

Monte Carlo simulation for kinetic chemotaxis model: an application to the traveling population wave

0 references

Identifiers

zbMATH Open document ID

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0 references

10.1007/s00285-023-01946-0

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Mathematics Subject Classification ID

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Sitelinks

Mathematics(1 entry)

mardi Publication:6110192

@@ Property / cites work @@
+MULTISCALE BIOLOGICAL TISSUE MODELS AND FLUX-LIMITED CHEMOTAXIS FOR MULTICELLULAR GROWING SYSTEMS
+Normal rank
@@ Property / cites work @@
+Chemotaxis and cross-diffusion models in complex environments: Models and analytic problems toward a multiscale vision
+Normal rank
@@ Property / cites work @@
+Q4365239
@@ Property / cites work: Q4365239 / rank @@
+Normal rank
@@ Property / cites work @@
+Discovering governing equations from data by sparse identification of nonlinear dynamical systems
+Normal rank
@@ Property / cites work @@
+Nonlinear mean field Fokker-Planck equations. Application to the chemotaxis of biological populations
+Normal rank
@@ Property / cites work @@
+Solving and learning nonlinear PDEs with Gaussian processes
+Normal rank
@@ Property / cites work @@
+Deep neural network modeling of unknown partial differential equations in nodal space
+Normal rank
@@ Property / cites work @@
+A family of embedded Runge-Kutta formulae
@@ Property / cites work: A family of embedded Runge-Kutta formulae / rank @@
+Normal rank
@@ Property / cites work @@
+Parsimonious representation of nonlinear dynamical systems through manifold learning: a chemotaxis case study
+Normal rank
@@ Property / cites work @@
+Turbulence Modeling in the Age of Data
@@ Property / cites work: Turbulence Modeling in the Age of Data / rank @@
+Normal rank
@@ Property / cites work @@
+From Individual to Collective Behavior in Bacterial Chemotaxis
+Normal rank
@@ Property / cites work @@
+Taxis equations for amoeboid cells
@@ Property / cites work: Taxis equations for amoeboid cells / rank @@
+Normal rank
@@ Property / cites work @@
+An equation-free computational approach for extracting population-level behavior from individual-based models of biological dispersal
+Normal rank
@@ Property / cites work @@
+Hybrid Modelling of Individual Movement and Collective Behaviour
+Normal rank
@@ Property / cites work @@
+Numerical bifurcation analysis of PDEs from lattice Boltzmann model simulations: a parsimonious machine learning approach
+Normal rank
@@ Property / cites work @@
+Model Reduction and Coarse-Graining Approaches for Multiscale Phenomena
+Normal rank
@@ Property / cites work @@
+Integration of neural networks with numerical solution of PDEs for closure models development
+Normal rank
@@ Property / cites work @@
+Model for chemotaxis
@@ Property / cites work: Model for chemotaxis / rank @@
+Normal rank
@@ Property / cites work @@
+The Patlak–Keller–Segel Model and Its Variations: Properties of Solutions via Maximum Principle
+Normal rank
@@ Property / cites work @@
+Dynamic systems identification with Gaussian processes
+Normal rank
@@ Property / cites work @@
+Data-driven blended equations of state for condensed-phase explosives
+Normal rank
@@ Property / cites work @@
+Deciding the Nature of the Coarse Equation through Microscopic Simulations: The Baby-Bathwater Scheme
+Normal rank
@@ Property / cites work @@
+Q4849796
@@ Property / cites work: Q4849796 / rank @@
+Normal rank
@@ Property / cites work @@
+Analyticity of the solutions of implicit function problems with analytic data
+Normal rank
@@ Property / cites work @@
+Mathematical models for chemotaxis and their applications in self-organisation phenomena
+Normal rank
@@ Property / cites work @@
+Data-Driven Discovery of Closure Models
@@ Property / cites work: Data-Driven Discovery of Closure Models / rank @@
+Normal rank
@@ Property / cites work @@
+A paradigm for data-driven predictive modeling using field inversion and machine learning
+Normal rank
@@ Property / cites work @@
+Nonlinear information fusion algorithms for data-efficient multi-fidelity modelling
+Normal rank
@@ Property / cites work @@
+Data driven governing equations approximation using deep neural networks
+Normal rank
@@ Property / cites work @@
+Hidden physics models: machine learning of nonlinear partial differential equations
+Normal rank
@@ Property / cites work @@
+Machine learning of linear differential equations using Gaussian processes
+Normal rank
@@ Property / cites work @@
+Physics-informed neural networks: a deep learning framework for solving forward and inverse problems involving nonlinear partial differential equations
+Normal rank
@@ Property / cites work @@
+Q3394879
@@ Property / cites work: Q3394879 / rank @@
+Normal rank
@@ Property / cites work @@
+SIMULATING INDIVIDUAL-BASED MODELS OF BACTERIAL CHEMOTAXIS WITH ASYMPTOTIC VARIANCE REDUCTION
+Normal rank
@@ Property / cites work @@
+Bayesian model selection using automatic relevance determination for nonlinear dynamical systems
+Normal rank
@@ Property / cites work @@
+Application of Coarse Integration to Bacterial Chemotaxis
+Normal rank
@@ Property / cites work @@
+Coarse-grained computational stability analysis and acceleration of the collective dynamics of a Monte Carlo simulation of bacterial locomotion
+Normal rank
@@ Property / cites work @@
+Semiglobal stabilization of nonlinear systems using fuzzy control and singular perturbation methods
+Normal rank
@@ Property / cites work @@
+Truncated Chebyshev series approximation of fuzzy systems for control and nonlinear system identification
+Normal rank
@@ Property / cites work @@
+Q3658782
@@ Property / cites work: Q3658782 / rank @@
+Normal rank
@@ Property / cites work @@
+Overview of mathematical approaches used to model bacterial chemotaxis. I: The single cell
+Normal rank
@@ Property / cites work @@
+Overview of mathematical approaches used to model bacterial chemotaxis. II: Bacterial popu\-lations
+Normal rank
@@ Property / cites work @@
+Data-driven forecasting of high-dimensional chaotic systems with long short-term memory networks
+Normal rank
@@ Property / cites work @@
+Reduced-space Gaussian process regression for data-driven probabilistic forecast of chaotic dynamical systems
+Normal rank
@@ Property / cites work @@
+Numerical aspects for approximating governing equations using data
+Normal rank
@@ Property / cites work @@
+Data-driven deep learning of partial differential equations in modal space
+Normal rank
@@ Property / cites work @@
+Macroscopic equations for bacterial chemotaxis: integration of detailed biochemistry of cell signaling
+Normal rank
@@ Property / cites work @@
+B-PINNs: Bayesian physics-informed neural networks for forward and inverse PDE problems with noisy data
+Normal rank
@@ Property / cites work @@
+Monte Carlo simulation for kinetic chemotaxis model: an application to the traveling population wave
+Normal rank