Parallel Jacobian-free Newton Krylov solution of the discrete ordinates method with flux limiters for 3D radiative transfer (Q447597): Difference between revisions

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A radiative transfer problem is considered in the form of an integro-differential equation with boundary conditions. In [\textit{W. F. Godoy} and \textit{P. E. DesJardin}, J. Comput. Phys. 229, No. 9, 3189--3213 (2010; Zbl 1187.65143)], the discrete ordinates method (DOM) and finite volume methods (FVMs) with flux limiters were applied to discretise the angular domain and the spatial domain, respectively. A Newton iteration yields the numerical solution of the resulting nonlinear systems of algebraic equations, where the linear systems are solved iteratively by the generalised minimal residual (GMRES) method, i.e., a Newton-Krylov technique is investigated. In the subsequent paper, W. F. Godoy and X. Liu consider Jacobian-free methods within the GMRES iteration to save memory and to reduce the computational effort. In the GMRES method, the Jacobian matrix is avoided by formulating the required matrix-vector product as a derivative. The derivatives are either calculated analytically (semi-exact approach) or computed by numerical differentiation. The latter technique requires the application of smooth flux limiters. The authors investigate both the Gram-Schmidt algorithm and the Householder transformation for the required orthogonalisation in the Newton-Krylov method. The construction of appropriate preconditioners is not within the scope of this paper. About half of the paper consists in the presentation of two test examples, in which the efficiency of the Jacobian-free approach is investigated in detail. In each example, the authors compare results for the step limiter and the van Leer limiter. The first example is a three-dimensional homogeneous isotropic scattering medium. The optimal choice of the increment within the numerical differentiation, which is used to avoid a computation of the Jacobian matrix, is examined. The second example is a three-dimensional non-homogeneous pure scattering medium modelling a stratocumulus cloud. Now the authors investigate a combined memory-shared and memory-distributed parallelisation using the software library MPI on a supercomputer. Spatial domain decompositions are employed for this purpose. The tests involve up to 2048 CPU cores and also different numbers of threads. The results demonstrate impressive speed-ups, and thus parallel efficiency is achieved.
Property / review text: A radiative transfer problem is considered in the form of an integro-differential equation with boundary conditions. In [\textit{W. F. Godoy} and \textit{P. E. DesJardin}, J. Comput. Phys. 229, No. 9, 3189--3213 (2010; Zbl 1187.65143)], the discrete ordinates method (DOM) and finite volume methods (FVMs) with flux limiters were applied to discretise the angular domain and the spatial domain, respectively. A Newton iteration yields the numerical solution of the resulting nonlinear systems of algebraic equations, where the linear systems are solved iteratively by the generalised minimal residual (GMRES) method, i.e., a Newton-Krylov technique is investigated. In the subsequent paper, W. F. Godoy and X. Liu consider Jacobian-free methods within the GMRES iteration to save memory and to reduce the computational effort. In the GMRES method, the Jacobian matrix is avoided by formulating the required matrix-vector product as a derivative. The derivatives are either calculated analytically (semi-exact approach) or computed by numerical differentiation. The latter technique requires the application of smooth flux limiters. The authors investigate both the Gram-Schmidt algorithm and the Householder transformation for the required orthogonalisation in the Newton-Krylov method. The construction of appropriate preconditioners is not within the scope of this paper. About half of the paper consists in the presentation of two test examples, in which the efficiency of the Jacobian-free approach is investigated in detail. In each example, the authors compare results for the step limiter and the van Leer limiter. The first example is a three-dimensional homogeneous isotropic scattering medium. The optimal choice of the increment within the numerical differentiation, which is used to avoid a computation of the Jacobian matrix, is examined. The second example is a three-dimensional non-homogeneous pure scattering medium modelling a stratocumulus cloud. Now the authors investigate a combined memory-shared and memory-distributed parallelisation using the software library MPI on a supercomputer. Spatial domain decompositions are employed for this purpose. The tests involve up to 2048 CPU cores and also different numbers of threads. The results demonstrate impressive speed-ups, and thus parallel efficiency is achieved. / rank
 
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Property / reviewed by
 
Property / reviewed by: Roland Pulch / rank
 
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Property / Mathematics Subject Classification ID
 
Property / Mathematics Subject Classification ID: 78M25 / rank
 
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Property / Mathematics Subject Classification ID
 
Property / Mathematics Subject Classification ID: 65F10 / rank
 
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Property / Mathematics Subject Classification ID
 
Property / Mathematics Subject Classification ID: 65H10 / rank
 
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Property / Mathematics Subject Classification ID
 
Property / Mathematics Subject Classification ID: 65R20 / rank
 
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Property / Mathematics Subject Classification ID
 
Property / Mathematics Subject Classification ID: 65Y05 / rank
 
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Property / Mathematics Subject Classification ID
 
Property / Mathematics Subject Classification ID: 78A40 / rank
 
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Property / Mathematics Subject Classification ID
 
Property / Mathematics Subject Classification ID: 78A45 / rank
 
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Property / zbMATH DE Number
 
Property / zbMATH DE Number: 6076799 / rank
 
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Property / zbMATH Keywords
 
radiative transfer equation (RTE)
Property / zbMATH Keywords: radiative transfer equation (RTE) / rank
 
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Property / zbMATH Keywords
 
discrete ordinates method (DOM)
Property / zbMATH Keywords: discrete ordinates method (DOM) / rank
 
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finite volume method
Property / zbMATH Keywords: finite volume method / rank
 
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Property / zbMATH Keywords
 
flux limiters
Property / zbMATH Keywords: flux limiters / rank
 
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Property / zbMATH Keywords
 
Jacobian-free Newton-Krylov method (JFNK)
Property / zbMATH Keywords: Jacobian-free Newton-Krylov method (JFNK) / rank
 
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Property / zbMATH Keywords
 
generalised minimal residual (GMRES)
Property / zbMATH Keywords: generalised minimal residual (GMRES) / rank
 
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Householder orthogonalisation
Property / zbMATH Keywords: Householder orthogonalisation / rank
 
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Gram-Schmidt orthogonalisation
Property / zbMATH Keywords: Gram-Schmidt orthogonalisation / rank
 
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parallel computation
Property / zbMATH Keywords: parallel computation / rank
 
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threads
Property / zbMATH Keywords: threads / rank
 
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domain decomposition
Property / zbMATH Keywords: domain decomposition / rank
 
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message passing interface (MPI)
Property / zbMATH Keywords: message passing interface (MPI) / rank
 
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electromagnetic radiation
Property / zbMATH Keywords: electromagnetic radiation / rank
 
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scattering medium
Property / zbMATH Keywords: scattering medium / rank
 
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Parallel Jacobian-free Newton Krylov solution of the discrete ordinates method with flux limiters for 3D radiative transfer
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    Parallel Jacobian-free Newton Krylov solution of the discrete ordinates method with flux limiters for 3D radiative transfer (English)
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    4 September 2012
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    A radiative transfer problem is considered in the form of an integro-differential equation with boundary conditions. In [\textit{W. F. Godoy} and \textit{P. E. DesJardin}, J. Comput. Phys. 229, No. 9, 3189--3213 (2010; Zbl 1187.65143)], the discrete ordinates method (DOM) and finite volume methods (FVMs) with flux limiters were applied to discretise the angular domain and the spatial domain, respectively. A Newton iteration yields the numerical solution of the resulting nonlinear systems of algebraic equations, where the linear systems are solved iteratively by the generalised minimal residual (GMRES) method, i.e., a Newton-Krylov technique is investigated. In the subsequent paper, W. F. Godoy and X. Liu consider Jacobian-free methods within the GMRES iteration to save memory and to reduce the computational effort. In the GMRES method, the Jacobian matrix is avoided by formulating the required matrix-vector product as a derivative. The derivatives are either calculated analytically (semi-exact approach) or computed by numerical differentiation. The latter technique requires the application of smooth flux limiters. The authors investigate both the Gram-Schmidt algorithm and the Householder transformation for the required orthogonalisation in the Newton-Krylov method. The construction of appropriate preconditioners is not within the scope of this paper. About half of the paper consists in the presentation of two test examples, in which the efficiency of the Jacobian-free approach is investigated in detail. In each example, the authors compare results for the step limiter and the van Leer limiter. The first example is a three-dimensional homogeneous isotropic scattering medium. The optimal choice of the increment within the numerical differentiation, which is used to avoid a computation of the Jacobian matrix, is examined. The second example is a three-dimensional non-homogeneous pure scattering medium modelling a stratocumulus cloud. Now the authors investigate a combined memory-shared and memory-distributed parallelisation using the software library MPI on a supercomputer. Spatial domain decompositions are employed for this purpose. The tests involve up to 2048 CPU cores and also different numbers of threads. The results demonstrate impressive speed-ups, and thus parallel efficiency is achieved.
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    radiative transfer equation (RTE)
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    discrete ordinates method (DOM)
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    finite volume method
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    flux limiters
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    Jacobian-free Newton-Krylov method (JFNK)
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    generalised minimal residual (GMRES)
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    Householder orthogonalisation
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    Gram-Schmidt orthogonalisation
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    parallel computation
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    threads
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    domain decomposition
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    message passing interface (MPI)
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    electromagnetic radiation
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    scattering medium
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