A Bayesian approach for inferring neuronal connectivity from calcium fluorescent imaging data
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Publication:641075
DOI10.1214/09-AOAS303zbMath1223.62162arXiv1107.4228MaRDI QIDQ641075
Liam Paninski, Joshua T. Vogelstein, Yuriy Mishchenko
Publication date: 21 October 2011
Published in: The Annals of Applied Statistics (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/1107.4228
point process; sequential Monte Carlo; generalized linear model; Metropolis-Hastings; spike train data
62P10: Applications of statistics to biology and medical sciences; meta analysis
62F15: Bayesian inference
65C05: Monte Carlo methods
92C20: Neural biology
92C55: Biomedical imaging and signal processing
Related Items
Unnamed Item, Unnamed Item, Unnamed Item, Detecting cell assemblies by NMF-based clustering from calcium imaging data, Reconstruction of sparse recurrent connectivity and inputs from the nonlinear dynamics of neuronal networks, Adaptive importance sampling for control and inference, Efficient methods for sampling spike trains in networks of coupled neurons, Learning neural connectivity from firing activity: efficient algorithms with provable guarantees on topology, Fast state-space methods for inferring dendritic synaptic connectivity, Reconstruction of recurrent synaptic connectivity of thousands of neurons from simulated spiking activity, Consistent estimation of complete neuronal connectivity in large neuronal populations using sparse ``shotgun neuronal activity sampling, Scalpel: extracting neurons from calcium imaging data, Reconstruction of sparse connectivity in neural networks from spike train covariances
Uses Software
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