Dynamics of actively regulated gene networks

DOI10.1016/j.physd.2010.12.010zbMath1218.92040MaRDI QIDQ633753

Erik Plahte, Liliana Ironi, Luigi Panzeri, Valeria Simoncini

Publication date: 29 March 2011

Published in: Physica D (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.physd.2010.12.010

zbMATH Keywords

singular perturbation; gene regulatory network; active regulation; sigmoidal response

Mathematics Subject Classification ID

37N25: Dynamical systems in biology

92D10: Genetics and epigenetics

92C42: Systems biology, networks

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Uses Software

• Eigtool
• booleannet
• GNA

Cites Work

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• A methodological basis for description and analysis of systems with complex switch-like interactions
• Comparing different ODE modelling approaches for gene regulatory networks
• Analysis and generic properties of gene regulatory networks with graded response functions
• Reconstruction of transcription-translation dynamics with a model of gene networks
• An Algorithm for Qualitative Simulation of Gene Regulatory Networks with Steep Sigmoidal Response Functions
• Global analysis of steady points for systems of differential equations with sigmoid interactions
• Analysis of continuous-time switching networks